Query= MSMg01no115_p18.b1 MSMg01no115_p18.b1 CHROMAT_FILE:
MSMg01no115_p18.b1 PHD_FILE: MSMg01no115_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:05 2005
(507 letters)
>mm_chr7_4606192_4607098
Length = 907
Score = 924 bits (478), Expect = 0.0
Identities = 496/502 (98%)
Strand = Plus / Minus
Query: 6 gaattctccagaagttctgcattacagagatttctcagatgaggacactgaggctcaatg 65
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 gaattctccagaagggctgcattacagagatttctcagatgaggacactgaggctcaatg 724
Query: 66 caattagagagatttggagagagaaaattccaaccctggtcaggaacagtggtatatgcc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 caattagagagatttggagagagaaaattccaaccctggtcaggaacagtggtatatgcc 664
Query: 126 tataataaataggcagaaggaatacttgagctctggagtttgaggctgtctggacacaca 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tataataaataggcagaaggaatacttgagctctggagtttgaggctgtctggacacaca 604
Query: 186 catagagatttaaacttaggtctttggacatttagtttactttagtcttaagataggatc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 catagagatttaaacttaggtctttggacatttagtttactttagtcttaagataggatc 544
Query: 246 ttgctttatagccccgactagatcaactatctaagttctggcccattaatccaggtttcc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ttgctttatagccccgactagatcaactatctaagttctggcccattaatccaggtttcc 484
Query: 306 tttctgttcttctaggggctatttcacatttgctcagtaagctgttcctttttcctttta 365
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 483 tttctgttcttctaggggctatttcacatttgttcagtaagctgttcctttttcctttta 424
Query: 366 aatttgcccccactccaggagatgatgagtactgagtataaaccgtcatgttttcacgtt 425
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aatttgtggccactccaggagatgatgagtactgagtataaaccgtcatgttttcacgtt 364
Query: 426 tcatgttcatggccaagtgtccttaggctgttttctgattattcttcctttggggttggg 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tcatgttcatggccaagtgtccttaggctgttttctgattattcttcctttggggttggg 304
Query: 486 ccagagtttctatttcccttag 507
||||||||||||||||||||||
Sbjct: 303 ccagagtttctatttcccttag 282
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_p18.g1 MSMg01no115_p18.g1 CHROMAT_FILE:
MSMg01no115_p18.g1 PHD_FILE: MSMg01no115_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:05 2005
(444 letters)
>mm_chr7_4427511_4428354
Length = 844
Score = 774 bits (400), Expect = 0.0
Identities = 433/448 (96%), Gaps = 8/448 (1%)
Strand = Plus / Plus
Query: 1 ttgcctaggctccaaccagcgaaggactgtggctatggctcacctgtctggggtgtgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcctaggctccaaccagcgaaggactgtggctatggctcacctgtctggggtgtgact 260
Query: 61 cagaagtagagtacttgcctagaatctattagtaaggggatgagacatagatcagtggta 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaagtagagtacttgcctagaatctattagtaaggggatgagacatagatcagtggtg 320
Query: 121 caatgtctgcctagcatatgcaagatactgggttcaatccccggcaccacaaaaagggta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatgtctgcctagcatatgcaagatactgggttcaatccccggcaccacaaaaagggta 380
Query: 181 gaagagggataattgtggaatctctggaggaggaaggaactaaaggtgatccacatttat 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 381 gaagagggataattgtggaatctctggaggaggaaggaactaaaggcgatccacattaat 440
Query: 241 ggagctgccctgtagttctgggaggatcgaatctgaacatgattggcatgcagtgtgcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 ggagctgccctgtagttctgggaggatcgaatctgaacatgattggcatgcagtgtggta 500
Query: 301 taagcatatgcattggctattacttgtaccttgctcattatcccacccc----atgatca 356
||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 501 taagcatatgcattggctattacttgtaccttgctcattatccta----gtggatgatca 556
Query: 357 gtatagcagatctgctgtttctagctatctgtcctgagttctactattctcacttataac 416
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gtatagtagatctgctgtttctagctatctgtcctgagttctactattctcacttataac 616
Query: 417 aatgcaagtgtggagctggagagatggc 444
| ||||||||||||||||||||||||||
Sbjct: 617 actgcaagtgtggagctggagagatggc 644
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space: 361956
Effective search space used: 361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
