BAC Information

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BAC

Clone NameMSMg01-116D15
Chromosome7 (Build37)
Map Location 136,449,933 - 136,450,209
singlet/doubletsinglet
Overlap genePpapdc1a
Upstream geneEG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144
Downstream geneBrwd2, LOC100043150, Fgfr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116D15.T7 (MSMg01no116_d15.b1)MSMg01-116D15.TJ (MSMg01no116_d15.g1)
ACCAG327658AG327659
length715715
length of high quality
(start - end)
539 (79 - 617)278 (80 - 357)
definitionCHROMAT_FILE: MSMg01no116_d15.b1 PHD_FILE: MSMg01no116_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:25 2005CHROMAT_FILE: MSMg01no116_d15.g1 PHD_FILE: MSMg01no116_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTAAACTGTCAAAGAGTTGATAAAGGGAGCCGGGCATG
GTATGCATGCATTAATTCATTGCTTTCTGCTCTTGACTGTGGATGTAATG
TGTCTAGCTGCTTCACATTTCAGCTGCCTTGGGTTCCCTACACAATGATG
GAATCTGGAATTGTGTGAGCCTGTGGGACTATAAAAGGCAGCCTGTTTTC
TGGTAGAGCTAGGTATAAACCCTGGAGACCCAGCAGATTAATCTGCCAGG
GATGGAAGGAAGTTTGCTACATGTCCCCAGACACTAGGCTTCTGACACAA
GGCTCCAGCTCCATAATTCTGTGGCCTTCAGTCACCTAGGCTGTCTGGAC
TCCACCCCACAGGTAGGCCCAGCCCACTATAAAAGGAGCTGCTTGCCCCC
TGCTCACTCTCTTGCCTCTCTCTCTTGCTCCCCCCGCATTCCCTTTTCCC
CTCTCTCCACTTGGCCATGGCCCAGCCTCTACTTCCCTACTCTTTCTATC
TCTCTGCCTCTCTACAATAAATGCCTTAAAACCACAAACTGCCTCTTTTC
ATGGGGACCACCATGTTGGAGCAATAAAGCAGGTCTTCTTCTAGATAGCC
ACACATCTAACCTCCCACGGGAGGCCTCTCTGTGTTCTCAGCCATGGCTT
CCACCATACCAAGCC
TTTTACACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGGGACGCTGGTCTGTTTG
ATGGTATTACTGTGAAGCTGCTCACACCGTATGTTAAGTTTGGCAGTATC
AGGGCTTCCTAGTGGGGCCAGCTCTCCTAGGAGGCTCTCAGTCCACAGTC
CTTGTATACTCACTGCTGAAAACGTGCATGAACGTGCACACAGACTAAGG
TCATATGACACCCAAGTTTAGGATACATAGTGAGGTTCCAAGGTGGACAG
TTCTGCTAGGACCTCGCTCTTGGATGACTGCCCCTTTTCTTGCCTAAAAC
AAGGAGAATTTCTGTATTCAGGACTACCATAGGCGTGACTATGGGAAGAC
CCAAGTTTCTAGATCCCTTTTGGCTCAGGATCAAAATTTCTCCAGCCAGG
CAGTGGAAGACTGGAACTTCTTGATGTTCCAGCTTCCAGCCATCCATGCT
TGAAACCATTCTGAATGAAATTTAGGTGGAGGCAGGGCTGGAAATGCTGG
GCAAAGGCCGTTGGCTGAAGTCTGATATCCTAAACTCCTAATATTGCCTG
TCTCCCAACCCCCACCACTTTTTTATTTAAGGCTTGCTTTTGTTTGTCCA
ACTAATGAAGAGCTAGCCCAGGCTGGGGATGTGCTAGATTACCATGGCAG
GAATATTTCTCACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_d15.g1 MSMg01no116_d15.g1 CHROMAT_FILE:
MSMg01no116_d15.g1 PHD_FILE: MSMg01no116_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:25 2005
         (278 letters)



>mm_chr7_136449733_136450409
          Length = 677

 Score =  484 bits (250), Expect = e-141
 Identities = 271/278 (97%), Gaps = 1/278 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgggacgctggtctgtttgatggtattactgtgaagctgctcacaccgtatgttaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||
Sbjct: 201 actgggacgctggtctgtttgatggtattactgtgaagctgctcagagtgtatgttaagt 260

                                                                       
Query: 61  ttggcagtatcagggcttcctagtggggccagctctcctaggaggctctcagtccacagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggcagtatcagggcttcctagtggggccagctctcctaggaggctctcagtccacagt 320

                                                                       
Query: 121 ccttgtatactcactgctgaaaacgtgcatgaacgtgcacacagactaaggtcatatgac 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 ccttgtatactcactgctgaaaacgtgcatgaacgtgcagacagactaaggtcatatgac 380

                                                                       
Query: 181 acccaagtttaggatacatagtgaggttccaaggtggacagttctgctaggacctcgctc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 acccaagtttaggatacatagtgaggttccaaggtggacagttctgctagaacctcgctc 440

                                                 
Query: 241 ttggatgactgccccttttcttgcctaaaacaaggaga 278
           ||||||||||| ||||||| ||||||||||||||||||
Sbjct: 441 ttggatgactgtccctttt-ttgcctaaaacaaggaga 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 677
Length adjustment: 9
Effective length of query: 269
Effective length of database: 668
Effective search space:   179692
Effective search space used:   179692
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)