BAC Information

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BAC

Clone NameMSMg01-116I17
Chromosome7 (Build37)
Map Location 134,886,672 - 134,887,149
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2
Downstream geneFbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116I17.T7 (MSMg01no116_i17.b1)MSMg01-116I17.TJ (MSMg01no116_i17.g1)
ACCAG327898AG327899
length726730
length of high quality
(start - end)		479 (75 - 553)246 (134 - 379)
definitionCHROMAT_FILE: MSMg01no116_i17.b1 PHD_FILE: MSMg01no116_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:50 2005CHROMAT_FILE: MSMg01no116_i17.g1 PHD_FILE: MSMg01no116_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACGCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGGACATTGTGCGGAATACAGAAAAACCCTATCTGGGAAAAA
ACAAAAACAAAACAAAACCAAAAAACATCCCACCACCACCACCAACAACA
ACAACAAAAGAAGATGGGCTTGAGAGAGTGAACACACAAAGAAAGATTTT
TAGTTTGTATTCTACCTCAAGCAGTGACTGTGTCTTTTTCCCATTGATTG
GGGCCTGGCCTCACAATCTTATTCAGCTGGCTAGTCTGAAAAGAATTGGT
GCACCGGAAATGGAGGAGGAAAGGGCAAAGTATTCACTGTCCCAGGCCAT
CAAATCCCTAGAATAGAGTAGTGGGCCTCTGTGTAGACAAAGGTTTGACA
GGGTGGGAAGGAATGAAACATTTGCATAAAAGTCTGACAAAAAGGAAGAA
ATGTAAAAGATTTTAAGTCCTTCTCCAGAACACACATTTTTATCGTGTTT
GATACAGAAAGGAAAACTCACAGTTGATATTTTTTTACACTCAGTTATAC
CCAACAGATAATTGATAGAGCCAGAATTTTAACTCAAGTCCAGAGCCCAG
GTTGAGAATTTCTGTATCATTTATAGACTAATCAAAATCCAGTTATGTGC
CTTTAACATGAGCTCAGCAAAACTATCATTACAAGTTAGACTTTTTATGG
ATCTTCCAATATTCTAAAGTCCAGCT

NAAAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGATAGCCGGAGACTGTTA
CATCGAAAAACCCCATCTCAANCAAACAAACCAACAAACAAAGAATGGGG
TTTTGATTTGTTTGTTACTGAGCTTGGTCCCATATCTGAAGCCAGGACTG
TACCTAGGAATTAGCTCATGGCTAATTGTAATGACATACTTAAAAATCTA
ATTTCCCACTAGCTTAGAAGGTTCAAAAGAAATGTTAAAAATGTCGAGGT
GCACATACTGATCAAAATCAAACCAAGATAAAACTCTTTTCTGTTGTTTG
TTTTTGATTTTGGCTTTTGGTTTGTTTTTTCCTCTTTTTCAGACAGGGTT
TCTTTGTGCAATTTTGACTGCCCTGGAACTAGATCTGTAAACCAGGCTAG
CCTTAAACCTCTGCATCCTGAGTGCTTGGATTAAAAAGGTGTATACCCCA
TACCCAACTAATCAATTACTGTTCTAGCTAGTCCTATACCTACTGACCCA
CGTTAGCTTCTTAGAGCCCCCTTGGTGGCTCACATACCTACCTATGACTC
CAGCTTCAAAGGATCTAATGCCCTCTTCTGACCCCCCTTGGACTTCTGAA
CACATGGGTGTTTATCCACATCCCCACACACATACAACTCCCCCCATTCT
TTTTTTCAAAGAATCCATTTATTTCACAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_i17.b1 MSMg01no116_i17.b1 CHROMAT_FILE:
MSMg01no116_i17.b1 PHD_FILE: MSMg01no116_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:50 2005
         (479 letters)



>mm_chr7_134886472_134887352
          Length = 881

 Score =  806 bits (417), Expect = 0.0
 Identities = 462/483 (95%), Gaps = 12/483 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacagaaaaaccctatct-gggaaaaaacaaaaacaaaacaaaaccaaaaaacatc---- 55
           |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
Sbjct: 678 tacagagaaaccctatctcgggaaaaaacaaaaacaaaacaaaaccaaaaaacatcccac 619

                                                                       
Query: 56  --ccaccaccaccaccaacaacaacaacaaaagaagatgggcttgagagagtgaacacac 113
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 caccaccaccaccaccaacaacaacaacaaaagaagatgggcttgagagagtgaacacac 559

                                                                       
Query: 114 aaagaaagatttttagtttgtattctacctcaagcagtgactgtgtctttttcccattga 173
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 558 aaagaaagatttttagtttgtattctacctcaggcagtgactgtgtctttttcccattgg 499

                                                                       
Query: 174 ttggggcctggcctcacaatcttattcagctggctagtctgaaaagaattggtgcaccgg 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttggggcctggcctcacaatcttattcagctggctagtctgaaaagaattggtgcaccgg 439

                                                                       
Query: 234 aaatggaggaggaaagggcaaagtattcactgtcccaggccatcaaatccctagaataga 293
           |||||||||     ||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 438 aaatggagg-----agggcaaagcagtcactgtcccaggccatcaaatccctagaataga 384

                                                                       
Query: 294 gtagtgggcctctgtgtagacaaaggtttgacagggtgggaaggaatgaaacatttgcat 353
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtagtgggcctctgtgcagacaaaggtttgacagggtgggaaggaatgaaacatttgcat 324

                                                                       
Query: 354 aaaagtctgacaaaaaggaagaaatgtaaaagattttaagtccttctccagaacacacat 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 323 aaaagtctgacaaaaaggaagaaatgtaaaagattttaagtccttctccaggacacacat 264

                                                                       
Query: 414 ttttatcgtgtttgatacagaaaggaaaactcacagttgatatttttttacactcagtta 473
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 263 ttttatcgtgtgtgatacagaaaggaaaactcacagttgatatttttttacactcagcta 204

              
Query: 474 tac 476
           |||
Sbjct: 203 tac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 881
Length adjustment: 10
Effective length of query: 469
Effective length of database: 871
Effective search space:   408499
Effective search space used:   408499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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