Query= MSMg01no116_o02.b1 MSMg01no116_o02.b1 CHROMAT_FILE:
MSMg01no116_o02.b1 PHD_FILE: MSMg01no116_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:15 2005
(605 letters)
>mm_chr7_97606050_97607054
Length = 1005
Score = 1106 bits (572), Expect = 0.0
Identities = 597/608 (98%), Gaps = 7/608 (1%)
Strand = Plus / Plus
Query: 5 gaattccaggctagcctggtctgcgtacagtgtgaattccaa-caaaacagccagggg-a 62
||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 198 gaattccaggccagtctggtctgcgtacagtgtgaattccaaacaaaacagccaggggga 257
Query: 63 ggcttagggtataagtcagcaccactgggaaccaatgttgtgagtttccgtctcagtttt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ggcttagggtataagtcagcaccactgggaaccaatgttgtgagtttccgtctcagtttt 317
Query: 123 catctgcatctgtaaaacaggaaaggacaaaattctttacctggttattttgtaaaattg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 catctgcatctgtaaaacaggaaaggacaaaattctttacctggttattttgtaaaattg 377
Query: 183 tgagtagactataaagacgcttaccaaactgagaggcctggaatttatcagaagactaat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tgagtagactataaagacgcttaccaaactgagaggcctggaatttatcagaagactaat 437
Query: 243 gagtaagatccctgtcccgaaagattcctgtcccgagaggcatcaagtcaattctagttt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gagtaagatccctgtcccgaaagattcctgtcccgagaggcatcaagtcaattctagttt 497
Query: 303 ttttgtttttgtttttatttatt-----atttatttatttatctatctatttatttattt 357
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 498 ttttgtttttgtttttatttatttatttatttatttatttatctatctatttatttattt 557
Query: 358 ctaaataagactgtactccaattcctgtggaaccaaaccccggtcctctgcaggagcagc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ctaaataagactgtactccaattcctgtggaaccaaaccccggtcctctgcaggagcagc 617
Query: 418 aattactcttaaccaatgagcggggtgtttgtttgtttttccccagtcctttttacactt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aattactcttaaccaatgagcggggtgtttgtttgtttttccccagtcctttttacactt 677
Query: 478 tctttgtccggtgctggcattagggtagccctgacttattagtgtcatttagcaactgtt 537
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 678 tccttgtccggtgctggcattagggtagcgctgacttattagtgtcatttagcaactgtt 737
Query: 538 cacttttgggagcgtttgtatcattttgatgtcatttgctgaatgtttggtagaatcatc 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cacttttgggagcgtttgtatcattttgatgtcatttgctgaatgtttggtagaatcatc 797
Query: 598 acgggaga 605
||||||||
Sbjct: 798 acgggaga 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_o02.g1 MSMg01no116_o02.g1 CHROMAT_FILE:
MSMg01no116_o02.g1 PHD_FILE: MSMg01no116_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:15 2005
(582 letters)
>mm_chr7_97761785_97762766
Length = 982
Score = 791 bits (409), Expect = 0.0
Identities = 467/505 (92%), Gaps = 31/505 (6%)
Strand = Plus / Minus
Query: 1 caggacagccagatctatacagagaaaccctgtctc-gggaaaaaaaacaaaccaacaa- 58
|||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||
Sbjct: 504 caggacagccagatctatacagagaaaccctgtctcggggaaaaaaaa-aaaacaacaat 446
Query: 59 ----------------------------caataaataaataaaagaactacccaaatata 90
|||||||||||||||||||||||||||||||
Sbjct: 445 aaataaataaataaataaataaataaataaataaataaataaaagaactacccaaatata 386
Query: 91 ttagacattcaacaagaccattataaaaattctgctgacatgtctcccttcccccaaatc 150
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 ttagacattcaacaaggccattataaaaattctgctgacatgtctccctttccccaaatc 326
Query: 151 aacaaattaatgccaaaattcacataaaaatacaagggatcagcagaagattcatgcttc 210
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacaaattaatgccaaaattcatataaaaatacaagggatcagcagaagattcatgcttc 266
Query: 211 ctgattttaaaactgagtgtggtactggcacagtaatagccatacagatgaatggagtgt 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgattttaaaactgagtgtggtactggcacagtaatagccatacagatgaatggagtgt 206
Query: 271 aattgtgattttaagaataaacacattcatcaatggccagttttcaacagtaggaccaag 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aattgtgattttaagaataaacacattcatcaatggccagttttcaacagtaggaccaag 146
Query: 331 ataattccatggtggaaagaatagtcttttcaataatttgtttaagggataacttaatat 390
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 145 ataattccatggtggaaagaatagtcttttcaataatttgtttaagggataactgaatat 86
Query: 391 tcacatttataaactaattaactggaattcatatcatcaatgaaaattaaattggattga 450
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 85 tcacatttataaactaattaactggaattcatatcatcaatgaaaattaaattggattta 26
Query: 451 aaagattgttttaagagttaaagtc 475
|||||||||||||||||||||||||
Sbjct: 25 aaagattgttttaagagttaaagtc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
