Query= MSMg01no117_k22.b1 MSMg01no117_k22.b1 CHROMAT_FILE:
MSMg01no117_k22.b1 PHD_FILE: MSMg01no117_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:19 2005
(521 letters)
>mm_chr7_50683047_50683968
Length = 922
Score = 872 bits (451), Expect = 0.0
Identities = 501/533 (93%), Gaps = 27/533 (5%)
Strand = Plus / Plus
Query: 1 tgactgttgagcaa-atacttccaagccgggcgtggtggcgcacgcctttaatcccaaca 59
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 205 tgactgttgagcaagatacttccaagccgggcgtggtggcgcacgcctttaatcccagca 264
Query: 60 ctcgagaggcagaggcaggcggatttctgagttcgaggccagcctggtctacaaagtgag 119
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcgggaggcagaggcaggcagatttctgagttcgaggccagcctggtctacaaagtgag 324
Query: 120 ctccaggacagcc----------agagaaaccctgtctcaaaaaaacaaaaacaaaaaaa 169
||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 325 ctccaggacagccggggctatacagagaaaccctgtctcgaaaaaacaaaa--------- 375
Query: 170 acaaaacaaaagatacttccagatatgggggcagaaggaacagagccaggttacatgaga 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ------caaaagatacttccagatatgggggcagaaggaacagagccaggttacatgaga 429
Query: 230 cctcgtctcaaataaataaaataattaattactaagttaagccttagacacagcagctgg 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cctcgtctcaaataaataaaataattaattactaagttaagccttagacacagcagctgg 489
Query: 290 gaattggagctgaaatgttgggccctgagattaatcagaaaagggaataagacagtggat 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gaattggagctgaaatgttgggccctgagattaatcagaaaagggaataagacagtggat 549
Query: 350 ggaggaagccacaggtactgtgtctcctggaggctgttcaaaggtaccagg-cagatgta 408
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 550 ggaggaagtcacaggtactgtgtctcctggaggctgttcaaaggtaccaggtcagatgta 609
Query: 409 ctgaccaccctgttatgttcctagggacaacctttctttgccgtcagctgggactgagtc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ctgaccaccctgttatgttcctagggacaacctttctttgccgtcagctgggactgagtc 669
Query: 469 atggcctacttcagccaccccaggcctgccaccctcgctcctgagcaccctag 521
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 atggcctacttcagccaccccaggcctgccaccctcgctcctgagcaccctag 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 922
Length adjustment: 10
Effective length of query: 511
Effective length of database: 912
Effective search space: 466032
Effective search space used: 466032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_k22.g1 MSMg01no117_k22.g1 CHROMAT_FILE:
MSMg01no117_k22.g1 PHD_FILE: MSMg01no117_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:19 2005
(254 letters)
>mm_chr7_50765568_50766221
Length = 654
Score = 476 bits (246), Expect = e-139
Identities = 249/250 (99%)
Strand = Plus / Minus
Query: 1 aagttaaaacattggaaggttatgtcatgggaccataccctgaccctcagaactttgatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aagttaaaacattggaaggttatgtcatgggaccataccctgaccctcagaactttgatt 391
Query: 61 ccttgagaacaggaacgtgcctgtcacaggaactgtgacatcagtactgggaatggtacc 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 390 ccttgagaacaggaacgtgcctgtcacaggaactgtgacgtcagtactgggaatggtacc 331
Query: 121 taaaatataaaatgcatgcagaactgtttgtgaagttcttgactaaatgaatgggttagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 taaaatataaaatgcatgcagaactgtttgtgaagttcttgactaaatgaatgggttagt 271
Query: 181 tatgaactgttgcaaggtttggagcaaagcagtggaatgagtagatctatagagaaagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tatgaactgttgcaaggtttggagcaaagcagtggaatgagtagatctatagagaaagat 211
Query: 241 tgttctctgc 250
||||||||||
Sbjct: 210 tgttctctgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space: 158025
Effective search space used: 158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
