Query= MSMg01no117_n21.b1 MSMg01no117_n21.b1 CHROMAT_FILE:
MSMg01no117_n21.b1 PHD_FILE: MSMg01no117_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:33 2005
(279 letters)
>mm_chr7_117363407_117364087
Length = 681
Score = 484 bits (250), Expect = e-141
Identities = 269/278 (96%), Gaps = 6/278 (2%)
Strand = Plus / Minus
Query: 4 ggaattcagaagtccaatgacctctttagctacatatggaggttgaagctagccaggact 63
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 560 ggaattcagaagtccaatgacatccttagctacatatggaggttgaagctagccaggact 501
Query: 64 aaatgaaaccctgcctgtaaattaattaataaacttcttgatgtccacatatgtcttatt 123
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaatgaaaccctgcctgta----aattaataaacttcttgatgtccacatatgtcttatt 445
Query: 124 ttaaaggggacaggagagataaactaatttgaaaagagtc--aaaaaaagaaaaaaaaag 181
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 444 ttaaaggggacaggagagataaactaatttggaaagagtcaaaaaaaaagaaaaaaaaag 385
Query: 182 aataagctgcatcaatgagtttaagggcagagggaatattgtgatcataaaaagagaaag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aataagctgcatcaatgagtttaagggcagagggaatattgtgatcataaaaagagaaag 325
Query: 242 agctataagaatatgttctatctgggtgtgggggaagg 279
||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agctataagaatatgttctatctgggtgtgggggaagg 287
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 681
Length adjustment: 9
Effective length of query: 270
Effective length of database: 672
Effective search space: 181440
Effective search space used: 181440
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no117_n21.g1 MSMg01no117_n21.g1 CHROMAT_FILE:
MSMg01no117_n21.g1 PHD_FILE: MSMg01no117_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:33 2005
(503 letters)
>mm_chr7_117238426_117239329
Length = 904
Score = 967 bits (500), Expect = 0.0
Identities = 503/504 (99%), Gaps = 1/504 (0%)
Strand = Plus / Plus
Query: 1 caggctaatctgagctactctcaaaaa-caagatatatccattatttgggttgttaaaat 59
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 caggctaatctgagctactctcaaaaaacaagatatatccattatttgggttgttaaaat 260
Query: 60 cagccttttgattttttgctactgttttttatgataatcaactatgagagtttcccacgg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagccttttgattttttgctactgttttttatgataatcaactatgagagtttcccacgg 320
Query: 120 gtctggcctaggcttatagttctatggctgagaatgaatttactccaaaaaactgggtta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctggcctaggcttatagttctatggctgagaatgaatttactccaaaaaactgggtta 380
Query: 180 gtgagttgtgtaaattatttatttttgctcctaatcttttgttttaaagcttatttacct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgagttgtgtaaattatttatttttgctcctaatcttttgttttaaagcttatttacct 440
Query: 240 taaagtttattattgactttgaatacagcagtttttaaaacaatactttttgtttgtttc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaagtttattattgactttgaatacagcagtttttaaaacaatactttttgtttgtttc 500
Query: 300 attaaattggtctgatgttggggaatgttgcacagggatccacaatgtaattgggggatg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attaaattggtctgatgttggggaatgttgcacagggatccacaatgtaattgggggatg 560
Query: 360 gggtgctggagagatggctcagtggttaattaagagtactgactgctcttccaaaggtcc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggtgctggagagatggctcagtggttaattaagagtactgactgctcttccaaaggtcc 620
Query: 420 tgagttcaaatcccagcaaccacagctcacaaccatccgtaatgagatctggcaccctct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgagttcaaatcccagcaaccacagctcacaaccatccgtaatgagatctggcaccctct 680
Query: 480 tctggagtgtctgaagacagctac 503
||||||||||||||||||||||||
Sbjct: 681 tctggagtgtctgaagacagctac 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 904
Length adjustment: 10
Effective length of query: 493
Effective length of database: 894
Effective search space: 440742
Effective search space used: 440742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
