BAC Information

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BAC

Clone NameMSMg01-117P14
Chromosome7 (Build37)
Map Location 30,172,107 - 30,172,514
singlet/doubletsinglet
Overlap geneSipa1l3
Upstream geneIxl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4
Downstream geneLOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117P14.T7 (MSMg01no117_p14.b1)MSMg01-117P14.TJ (MSMg01no117_p14.g1)
ACCAG328968AG328969
length706704
length of high quality
(start - end)
455 (40 - 494)412 (73 - 484)
definitionCHROMAT_FILE: MSMg01no117_p14.b1 PHD_FILE: MSMg01no117_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:41 2005CHROMAT_FILE: MSMg01no117_p14.g1 PHD_FILE: MSMg01no117_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXCTAATGCGAGAGAATCCGCGGAATTCT
AAGACCATTCCGTTGCATCGACCCCCCGGTGTGGCACCCTGGACGCCACT
GGAGACCGAGGAATCATAACAGGGGCCCTGATCCTTAGGAGTGTTTCCTC
GCTTAAGGGAAATTAGGTCCCATGATGATGATGGCTTCCAGTATGCCTGT
CCAGTGGTCTCACATCCCCATTTGCCACAGTAGCCCTCTCCCGGCCCTCC
ACACCCTATTGGTACAGTATGACCGGGGCAAACATAGAAGTCATACAGTC
TTGTCCTTCTTCTTCCTCCGGGAGTGCGGCAACCATCCCCAATATCGGGT
TCTGGGTCATCCCAGTAGTCTCCTACTAAATCACACAGGTCAAAATATAG
TTTAGGGAAGGTGTCTGTCATCGTCCCCAGGAGGGAGGTGGCGTTAGCTG
TTTGTCCTGTCATTAGGTTGGTAACTCTCCAAGTAACATTGAAGATCTGG
TGAGGGCTGTCACGTTGTACCGAGGCTCCTGCCCTCACCAAGATCCCCAT
AACTATTAGGGTGTCCCACGGGTTAATCTTATCTTTAAGGCTTTTTGAGA
ACGTTGGACCTTTCCATGCTGTCCCGGTTGGACGAGATGTCCCCGTCTTT
TACTTGAGCGGTGTGTATTCACTTACAGATGCTTTCCTACTTACAAACCT
GTGGGT
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATACACAGACTAGGATGACCTCAGACTCA
GAGATCTGCCTGCTGCTGCCTCCCAGGTACTCCCCACTTACTCTTGACAT
CCAGCTGCGCGGCATACTTGGTGAAGCCCTTCAGACAGACCTTGTCGCCC
AAGAGGTCCAGGAACTCCTCAAAGGCAGGGCCGGCTTCCTCGTTGTTGTA
CATCTCCTCCTCTGAGCTCTGGCCCGCCTTGCAGTACAGGATGCCGACCT
TGTGCTTTCGGCACAGCTGTGTGGGGGAAGAGTGGAGCAGGTTCAAGGAG
GGTCCAGGGAATGGGACATGGCGAGGAGTCCTGAGGGCCAAGCCCAGGAG
CTGCTGGGACCCCTTGGCAACTCAATGCACACAGTCTTCGGGGAAGGAAC
CCGTGTCGGGCATGCCCCAGAGACACGAGCGCAGGGAGGAGCACACTCTG
TCATCTGTCTTTATACGGCTGTGCCAGTCTGCGGTATTCTTAAGGCAGAG
CTGGGAGCTGGGACTGGCTTCCGACAGGAGACGATTGTTCGTGAGACGAA
TCTGTGCCAAAGCAAAAACTCCGCTACTCGGGATCTGCACATATCCGTAA
ATCCGGAACCAATGCCAGGGCCTTACGAACAGGTCTAAAGTCACTGAGGG
GCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_p14.g1 MSMg01no117_p14.g1 CHROMAT_FILE:
MSMg01no117_p14.g1 PHD_FILE: MSMg01no117_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:41 2005
         (412 letters)



>mm_chr7_30171903_30172714
          Length = 812

 Score =  673 bits (348), Expect = 0.0
 Identities = 393/408 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   cagactaggatgacctcagactcagagatctgcctgctgctgcctcccaggtactcccca 64
           |||||||||||||||||||||| |||||||||||||| |||||| ||||||| |||||||
Sbjct: 205 cagactaggatgacctcagactgagagatctgcctgccgctgccccccaggtgctcccca 264

                                                                       
Query: 65  cttactcttgacatccagctgcgcggcatacttggtgaagcccttcagacagaccttgtc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttactcttgacatccagctgcgcggcatacttggtgaagcccttcagacagaccttgtc 324

                                                                       
Query: 125 gcccaagaggtccaggaactcctcaaaggcagggccggcttcctcgttgttgtacatctc 184
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 gcccaagaggtccaggaactcctcgaaggcagggccggcttcctcgttgttgtacatctc 384

                                                                       
Query: 185 ctcctctgagctctggcccgccttgcagtacaggatgccgaccttgtgctttcggcacag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 385 ctcctctgagctctggcccgccttgcagtacaggatgccgaccttgtgcttgcggcacag 444

                                                                       
Query: 245 ctgtgtgggggaagagtggagcaggttcaaggagggtccagggaatgggacatggcgagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 445 ctgtgtgggggaagagtggagcaggttcaaggagggtccagggaatgggacatggggagg 504

                                                                       
Query: 305 agtcctgagggccaagcccaggagctgctgggaccccttggcaactcaatgcacacagtc 364
           |||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| |
Sbjct: 505 agtcctgagggccaggcccaggagctgctgggaccacttgggaactcaatgcacacagcc 564

                                                           
Query: 365 ttcggggaaggaacccgtgtcgggcatgccccagagacacgagcgcag 412
           || ||||||||||||||||| |||| |||||||||||| |||||||||
Sbjct: 565 tttggggaaggaacccgtgttgggcgtgccccagagactcgagcgcag 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)