BAC Information

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BAC

Clone NameMSMg01-118N11
Chromosome7 (Build37)
Map Location 29,058,094 - 29,214,536
singlet/doubletdoublet
Overlap geneLOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b
Upstream geneNumbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2
Downstream gene1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118N11.T7 (MSMg01no118_n11.b1)MSMg01-118N11.TJ (MSMg01no118_n11.g1)
ACCAG329611AG329612
length716698
length of high quality
(start - end)
226 (140 - 365)419 (64 - 482)
definitionCHROMAT_FILE: MSMg01no118_n11.b1 PHD_FILE: MSMg01no118_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:49 2005CHROMAT_FILE: MSMg01no118_n11.g1 PHD_FILE: MSMg01no118_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,214,311 - 29,214,536)(29,058,094 - 29,058,508)
sequence
CAAATACACAAACATCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCCAGGTTACAAAAAGAACATAGCAGGACCTA
ATCCATTCCACCCTTCCCCCTCCTCCCAAAANCCCATGTGATTTTAGGGC
ATATATGCCTGTCATCCCAGCACTCAGGAGACAAGAAGATCTCCAGTGCT
AAGTCATCTTAACTACATAGCAAGACCCTGGCTTCAGGGGAAAAGACTGT
ATCTTCAGGAGAGGAAAGAAACAGATGACAAGAGAGTCTGAAATATCTAC
AAAGGTGACAATTTTATAGGAGGACGAGGTTTTATGGAACATTCTGCGAG
AGGTAAAGAAGCAAGAGCTTTTGTTTATACCACCACCAACGCAACTTCCT
TTTTACTCTAGGCTTTCTCAGAGTTCCCATGATGCACTTATCTTCCAGTA
GCCCTGCTTGTCTTCTCTTTGTTTCCCCAGAACAATTCATTAACAGAAAA
AGCTTATCTCATTTTATTTTATTTCATCTTTGGGGTTCTTCGAGACAGGG
TTTCTCTGTATAGCCTTGGTTGCCTTGGAACTCACTCTGCAGACCAGGCT
GGCCTCGAACTCATAAATCCTTCTTGCCTCTGCCTCCCATGTGCTAGGAT
TAACGGTGTGCGCCACCACGCCCGGTTAAAAGGCTCTTTTTAGCGAGGTG
ATGCTATTCTTTTTTT
NCCGATGAAGTGCGAGGCCTGGCGGCCGCCTTTCCAACAAAGTGAGGTGA
CCTATAGATTCCCCGCGGAATTCTGTGTACTTGAATGCCAGGTGCTCAAG
GAGGCCACAGGAGGGCGTCTGACCCCTGGAACTGCAGTTACAGAAGGCCG
AGCTGCTGTGTGAACGCTGGGAACTGAACCCAGGTCCGGCAGAGGAGCAG
CCAGTGCTCTGAGCCATCTCTCCAGCCCCACTCAATAATGTTAGTTTGTC
TGATGATTCTTCTCTGACTTTTCAGTGTGTGTTCATGTGTGTGGTGTACA
CATACATGTGTATGTGTGTCCATATGTGCAGAGGCCAGAAGAGGGTGTCA
GGTAACCTCTATCACTTTCCTTGAGACTCTCACTGAACCTGGAGCTAAGC
TGATGGCCTCCCTCTGTCTCTACCTCACAGAGGTGGGGTTATAGCACATG
TGGCCATGCTCAGCTTTAACATGGATGCTGAGACCCAAATTTCAGGTCCT
CATGAGTGATAGACATGTCTGATGGTCCCCATGGGTGACAGTCTGATGGC
CCCCATGGCTGACAGTCTGATGGTCCCCATGTGTGACAGTCTGATGGCCC
TCATGGGCGCACGTCTGACGGCCCTCATGAGTGACCGTCCTGATGGCCTT
CTCGATTGACCGCCCGATGGCCCTCATGGCCGACTGTCCGATGGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_n11.b1 MSMg01no118_n11.b1 CHROMAT_FILE:
MSMg01no118_n11.b1 PHD_FILE: MSMg01no118_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:49 2005
         (226 letters)



>mm_chr7_29214017_29214642
          Length = 626

 Score =  398 bits (206), Expect = e-115
 Identities = 221/226 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gattttagggcatatatgcctgtcatcccagcactcaggagacaagaagatctccagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gattttagggcatatatgcctgtcatcccagcactcaggagacaagaagatctccagtgc 461

                                                                       
Query: 61  taagtcatcttaactacatagcaagaccctggcttcaggggaaaagactgtatcttcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 taagtcatcttaactacatagcaagaccctggcttcaggggaaaagactgtatcttcagg 401

                                                                       
Query: 121 agaggaaagaaacagatgacaagagagtctgaaatatctacaaaggtgacaattttatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 agaggaaagaaacagatgacaagagagtctgaaatatctacaaaggtgacaattttatag 341

                                                         
Query: 181 gaggacgaggttttatggaacattctgcgagaggtaaagaagcaag 226
           ||||||||||   || ||||||||||| ||||||||||||||||||
Sbjct: 340 gaggacgagggagtagggaacattctgtgagaggtaaagaagcaag 295


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no118_n11.g1 MSMg01no118_n11.g1 CHROMAT_FILE:
MSMg01no118_n11.g1 PHD_FILE: MSMg01no118_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:49 2005
         (419 letters)



>mm_chr7_29057890_29058708
          Length = 819

 Score =  772 bits (399), Expect = 0.0
 Identities = 411/415 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtgtacttgaatgccaggtgctcaaggaggccacaggagggcgtctgacccct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtgtacttgaatgccaggtgctcaaggaggccacaggagggcgtctgacccct 264

                                                                       
Query: 65  ggaactgcagttacagaaggccgagctgctgtgtgaacgctgggaactgaacccaggtcc 124
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| 
Sbjct: 265 ggaactgcagttacagaaggccgagctgctgtgtgaatgctgggaactgaacccaggtct 324

                                                                       
Query: 125 ggcagaggagcagccagtgctctgagccatctctccagccccactcaataatgttagttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggcagaggagcagccagtgctctgagccatctctccagccccactcaataatgttagttt 384

                                                                       
Query: 185 gtctgatgattcttctctgacttttcagtgtgtgttcatgtgtgtggtgtacacatacat 244
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtctgatgattcttctctaacttttcagtgtgtgttcatgtgtgtggtgtacacatacat 444

                                                                       
Query: 245 gtgtatgtgtgtccatatgtgcagaggccagaagagggtgtcaggtaacctctatcactt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgtatgtgtgtccatatgtgcagaggccagaagagggtgtcaggtaacctctatcactt 504

                                                                       
Query: 305 tccttgagactctcactgaacctggagctaagctgatggcctccctctgtctctacctca 364
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 505 tccttgagactctcactgaacctggagctaagctgatggcctccttctgtctctacctca 564

                                                                  
Query: 365 cagaggtggggttatagcacatgtggccatgctcagctttaacatggatgctgag 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagaggtggggttatagcacatgtggccatgctcagctttaacatggatgctgag 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)