BAC Information

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BAC

Clone NameMSMg01-120F09
Chromosome7 (Build37)
Map Location 143,189,798 - 143,190,038
singlet/doubletsinglet
Overlap genenone
Upstream geneDock1, LOC100043254, Foxi2, Clrn3, Ptpre, Mki67, LOC668764
Downstream geneLOC546009, EG621677, EG668771, Mgmt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120F09.T7 (MSMg01no120_f09.b1)MSMg01-120F09.TJ (MSMg01no120_f09.g1)
ACCAG330729AG330730
length711709
length of high quality
(start - end)
241 (74 - 314)237 (78 - 314)
definitionCHROMAT_FILE: MSMg01no120_f09.b1 PHD_FILE: MSMg01no120_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:44 2005CHROMAT_FILE: MSMg01no120_f09.g1 PHD_FILE: MSMg01no120_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATAATAATTTGCGGCCCGCAAACGACTCACATTCGGACGGGGATCCGNG
GAANTCNNCATTACTTNCACCGCAGAGGCTGCCCACTATTCTTATGTCAG
AGAATGGACCAGCCAAGGACCCAGATTGGGATCATGTAAGGCATAGTTGT
TCCAATCTCCAAGAGGGTACAGTGTGGCTCGGGGTTAGAACAAGAGAGAA
TTACCCATGTGAGAAGGTTCACATCTCTGCAAGTAACACCAACACAGTAC
TGATTATGCCCCTTCCTGCTCTGCTAGAAGAGGACCAAGATAGGCCTATG
GCCATACCACAGCCTGTTACTAGTTTCTGAAAGAAAGCCCTCTCTGGAAT
TTTGCTATATTAATTTCCCGACACACAGTGGCTTCCCCTAGAAGGAGGAT
GAACGACTAGGTAGGCTGCTCTCTGGGCCACCTAGATCTGGCAGCACAGT
GAGTTAGAATTTTTTTCAGTAGCTTCCTGGAGAAATCAAGGGACTGTTTC
CAGAATTCTCTAAAGGTGCCTCTGTCTCCAGATCAATCTTGGGCCTCTAG
GGGCTGGCAAGGCTGTAGATAGAAGCCAGGAGAGCCATAATGAAATCTCA
ATGGGCTTGGTTTCTAGCTCACATACATACAGGTTGGCCAGGATGTCTAT
TTTTTCTTTTGTATGAAGATGCGCACATGTGGGGGCTTGTGTTCATACAG
TTTGTTTCATT
TCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCCTCAAGAAAATCCAGGATAGCCAGGGCTACACAGA
GAAACCCTGTCTTGAAAAACCCAAACAGAACCAGGGCTAGAGAGAGGGCT
CAGTGGTTAAGGGCTCTCTTATCGGTCTTGTAGAAGACCAGCGTTTAGTT
TTCTGCACTCACATGGGGTAGCTCACAACTTCCTAGAACTCCAGCTCCAG
GGAATCTAATGTCTTCTTCTGGCCTCTGTGCACACCAGCATGTACATGTG
CATACTCGTACAGAGTTTTTCTGATTTTATGGATGGGCAGACAGAAACAA
ATTCCCTTCTTCTCTTCCCTCCTCTCCCCACTTACGCTCTGTATTTTCCC
ATCCAGCAAATTTGGGGACTGCCTGTGTATGATGTTGGCAGGTGCCGGGG
AGGCCACCGTAACAGATGTATTTCCTCATCTCCACAAAACACAGCCATCT
CATTCATGATACGGAGGGACACACATCAGCCTCCTAGATGATACCTAGCT
GATGTTTGCTTGTGCTCAGGGGGAGTCCCTGGCGTAACTTGCTTTGGCGT
GCAGAGGAAGAAGCTCCCCCAGGGGCGCAGAACCCTGATCTGGAGCTTGA
GAATTCTTTGTTATTTTCACATAAGCGCGACGAAGGGTATTGCGCTCCAC
GCTCTGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_f09.b1 MSMg01no120_f09.b1 CHROMAT_FILE:
MSMg01no120_f09.b1 PHD_FILE: MSMg01no120_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:44 2005
         (241 letters)



>mm_chr7_143189598_143190238
          Length = 641

 Score =  412 bits (213), Expect = e-119
 Identities = 234/241 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggctgcccactattcttatgtcagagaatggaccagccaaggacccagattgggatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaggctgcccactattcttatgtcagagaatggaccagccaaggacccagattgggatc 382

                                                                       
Query: 61  atgtaaggcatagttgttccaatctccaagagggtacagtgtggctcggggttagaacaa 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtaaggcatatttgttccaatctccaagagggtacagtgtggctcggggttagaacaa 322

                                                                       
Query: 121 gagagaattacccatgtgagaaggttcacatctctgcaagtaacaccaacacagtactga 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 gatagaattacccatgtgagaaggttcacatctctgcaagtaacaccaacacagtacaga 262

                                                                       
Query: 181 ttatgccccttcctgctctgctagaagaggaccaagataggcctatggccataccacagc 240
             |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 261 agatgccccttcctgctctgctggaagaggaccaagataggcctatggccatgccacagc 202

            
Query: 241 c 241
           |
Sbjct: 201 c 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)