BAC Information

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BAC

Clone NameMSMg01-120F17
Chromosome7 (Build37)
Map Location 125,087,515 - 125,222,357
singlet/doubletdoublet
Overlap genenone
Upstream geneXylt1, LOC669758
Downstream geneRps15a, Arl6ip1, 2610207I05Rik, LOC100043339, Syt17, LOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5, Mir16, 6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120F17.T7 (MSMg01no120_f17.b1)MSMg01-120F17.TJ (MSMg01no120_f17.g1)
ACCAG330745AG330746
length706705
length of high quality
(start - end)
563 (46 - 608)559 (71 - 629)
definitionCHROMAT_FILE: MSMg01no120_f17.b1 PHD_FILE: MSMg01no120_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:46 2005CHROMAT_FILE: MSMg01no120_f17.g1 PHD_FILE: MSMg01no120_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,221,818 - 125,222,357)(125,087,515 - 125,088,072)
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATCCG
CGGAATTCCTATTTCCCCCAGGGGTGTGTCTCAGTGGTGGAGTGCTTGCC
TACTTTATTACCCAGCACTGCAAGGAAAAAGAGAGATCATGCTGACAGTC
ATGTGAGGGGGATAGTAGTACAGGTTAGACCATGAGGGCAGTTGTGTGAA
TGGGGGATGTGGTAATGGAGACTAGGGACAGGATAGAGACATTGTAGGAG
GCTTCTCTGGCTCAGGAAGCTGCCTTTTACATTGGAGACTGCACTAAGAT
CACTTGCAGAGATGGCTGATCATCCCAGCTCCTGGCTGAGCCCTGGAGTC
TGTGTTTAGCAAGCTTGCAAGCATTACCATGTGGCTGGTAGCAGATCATG
AGTAGCCAAGAACTCAGAAACAGATGATGAGGAGTTGTGGCAAGTGAGAC
CAGGTGCCAGGCTAGGAAGGGGTTGGTGTGGATTGGATGTGAGGTGTCCC
ACAGTCACGTGTTTAGAAGGCCGTGGAACCTTTAGGAGATAGAGTCTTGC
TGGAGGAATTGTCTCTGAGGGCAGGCCTTGTGGTCTTCTGGCTTAATTTT
CTGTTTCTTGGTGTAGGCACAGTGAGGTCAGATACCTCCATCATTGCGGC
TAATGCCTTCTCTGAGATAATGGTTAATGTTCTTCTTTAGGTCTTGAACC
AAATAN
CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTACACGCGGAATTCTACTGTGCCCAATTTAACACCATA
AAATGGTGGGGTTTGCTGTCGAAAAAATATGCCTTGATGTTTATTTTCAA
GCAGGATGTCCATTCCTCAGCTCATAATGCAGTATCTGGAACCATGCCTG
CCCATAATGATGCTGGATATATTCACAGCGTGAAGCCAGTCACTGTGGCT
GGAAAGGTAGCTATCTTTGTCTTCTCTGAACCTTATTCTATACATTTCTA
GGAGCGTTCCACTGCCTATTCATAATGTTCAGACCCGTCATGAGCACATC
GCCCACGTCAGGACATGTGAGGCCTTTGGGATATTTTCCAACTGAAGCTG
GTGAGAAAGGTCCCTTTCTTTCCCTCTTGGGTCGGGAAAGGTGGACCAGA
CTGATCTGAAGCAATGTCCCTTCTTCAGCAGAAAGTTGTCCTAGTCCCTG
GAGGTGACACGAGAGCACTCAGGGAAGACAGTGAGGCCAACAAAGAATGA
CATGGAGGCATGAGACCTGGTGGCCCTGAGGCCAGAAGCCTGCATGCATT
TGCTTGCATGAATGTATGAGTCCTCTTTCTAAATGGCTAAGAAGGTAAAG
GTGCTTGCTACCAACCCTGTCTTCCAAAGTTTGAACCTCAAACTACACAT
TGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_f17.b1 MSMg01no120_f17.b1 CHROMAT_FILE:
MSMg01no120_f17.b1 PHD_FILE: MSMg01no120_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:46 2005
         (563 letters)



>mm_chr7_125221694_125222656
          Length = 963

 Score =  982 bits (508), Expect = 0.0
 Identities = 532/540 (98%)
 Strand = Plus / Minus

                                                                       
Query: 24  caggggtgtgtctcagtggtggagtgcttgcctactttattacccagcactgcaaggaaa 83
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 664 caggggtgtgtctcagtggtggagtgaatgcctactttattacccagcactgcaaggaaa 605

                                                                       
Query: 84  aagagagatcatgctgacagtcatgtgagggggatagtagtacaggttagaccatgaggg 143
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 604 aagagagatcatgctgacagtcatgtgagggggatagtagtacagattagaccatgaggg 545

                                                                       
Query: 144 cagttgtgtgaatgggggatgtggtaatggagactagggacaggatagagacattgtagg 203
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cagttgtgtggatgggggatgtggtaatggagactagggacaggatagagacattgtagg 485

                                                                       
Query: 204 aggcttctctggctcaggaagctgccttttacattggagactgcactaagatcacttgca 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aggcttctctggctcaggaagctgccttttacattggagactgcactaagatcacttgca 425

                                                                       
Query: 264 gagatggctgatcatcccagctcctggctgagccctggagtctgtgtttagcaagcttgc 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gagatggctgatcatcccagctcctggctgagccctggagtctgtgtttagcaagcttgc 365

                                                                       
Query: 324 aagcattaccatgtggctggtagcagatcatgagtagccaagaactcagaaacagatgat 383
           ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 364 aagcattaccatgtggctggtggcagatgatgagtagccaagaactcagaaacagatgat 305

                                                                       
Query: 384 gaggagttgtggcaagtgagaccaggtgccaggctaggaaggggttggtgtggattggat 443
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ggggagttgtggcaagtgagaccaggtgccaggctaggaaggggttggtgtggattggat 245

                                                                       
Query: 444 gtgaggtgtcccacagtcacgtgtttagaaggccgtggaacctttaggagatagagtctt 503
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gtgaggtgtcccatagtcacgtgtttagaaggccgtggaacctttaggagatagagtctt 185

                                                                       
Query: 504 gctggaggaattgtctctgagggcaggccttgtggtcttctggcttaattttctgtttct 563
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gctggaggaattgtctctgagggcaggccttgtggtcttctggcttaattttctgtttct 125


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no120_f17.g1 MSMg01no120_f17.g1 CHROMAT_FILE:
MSMg01no120_f17.g1 PHD_FILE: MSMg01no120_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:46 2005
         (559 letters)



>mm_chr7_125087315_125088273
          Length = 959

 Score = 1002 bits (518), Expect = 0.0
 Identities = 548/558 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattctactgtgcccaatttaacaccataaaatggtggggtttgctgtcgaaaaaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattctactgtgcccaatttaacaccataaaatggtggggtttgctgtcgaaaaaatat 260

                                                                       
Query: 61  gccttgatgtttattttcaagcaggatgtccattcctcagctcataatgcagtatctgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccttgatgtttattttcaagcaggatgtccattcctcagctcataatgcagtatctgga 320

                                                                       
Query: 121 accatgcctgcccataatgatgctggatatattcacagcgtgaagccagtcactgtggct 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 accatgcctgcccataatgatgctggatatattcacatcgtgaagccagtcactgtggct 380

                                                                       
Query: 181 ggaaaggtagctatctttgtcttctctgaaccttattctatacatttctaggagcgttcc 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 ggaaaggtagctatctttgtcttctctgaaccttattccatacatttctaggagcgttcc 440

                                                                       
Query: 241 actgcctattcataatgttcagacccgtcatgagcacatcgcccacgtcaggacatgtga 300
           || ||||| ||| ||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 441 accgcctagtcacaatgttcagacccgtcatgagcacatcacacacgtcaggacatgtga 500

                                                                       
Query: 301 ggcctttgggatattttccaactgaagctggtgagaaaggtccctttctttccctcttgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 ggcctttgggatattttccaactgaagctggtgagaaaggtccctttcttttcctcttgg 560

                                                                       
Query: 361 gtcgggaaaggtggaccagactgatctgaagcaatgtcccttcttcagcagaaagttgtc 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcaggaaaggtggaccagactgatctgaagcaatgtcccttcttcagcagaaagttgtc 620

                                                                       
Query: 421 ctagtccctggaggtgacacgagagcactcagggaagacagtgaggccaacaaagaatga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 ctagtccctggaggtgacacgagagcactcagggaagacagtgaggccaacaaggaatga 680

                                                                       
Query: 481 catggaggcatgagacctggtggccctgaggccagaagcctgcatgcatttgcttgcatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catggaggcatgagacctggtggccctgaggccagaagcctgcatgcatttgcttgcatg 740

                             
Query: 541 aatgtatgagtcctcttt 558
           ||||||||||||||||||
Sbjct: 741 aatgtatgagtcctcttt 758


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)