Query= MSMg01no120_n21.b1 MSMg01no120_n21.b1 CHROMAT_FILE:
MSMg01no120_n21.b1 PHD_FILE: MSMg01no120_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:27 2005
(624 letters)
>mm_chr7_134966554_134967577
Length = 1024
Score = 1091 bits (564), Expect = 0.0
Identities = 600/622 (96%), Gaps = 20/622 (3%)
Strand = Plus / Plus
Query: 6 ggaattctgacatatcccaatccagaggccactgtcacacagcaaactggaacttcaagc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 206 ggaattctgacatatcccaatccagaggccactgtcacacagcaaactggaacctcaagc 265
Query: 66 tccttgggctcatgtcattcttaaaatgtctcagcaccctccctgcccaaaaccattctc 125
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 266 tccttgggctcatgtcattcttaaaatgtctcggcaccctccctgcccaaaaccattctc 325
Query: 126 agcaggcgagcacagtccctccaaagagcagcctcccctgcagccccccacctttcctcc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agcaggcgagcacagtccctccaaagagcagcctcccctgcagccccccacctttcctcc 385
Query: 186 tccagctctgctggccaaccgcctggagcctggcccctggcttccagcagcctgcccctg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tccagctctgctggccaaccgcctggagcctggcccctggcttccagcagcctgcccctg 445
Query: 246 gctgctcccatgctccagttcccccaagcactgtgtggcctatgtcacacaacccaattc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gctgctcccatgctccagttcccccaagcactgtgtggcctatgtcacacaacccaattc 505
Query: 306 tgtgacctggtggatggatctttctctcctctctcacctttggggtcacctaagctgagg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgtgacctggtggatggatctttctctcctctctcacctttggggtcacctaagctgagg 565
Query: 366 ctctggcccaggggaactcagtttcacacacacacacacacacacacacacacacacaca 425
|||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 566 ctctggcccaggggaactcagt----------------cacacacacacacacacacaca 609
Query: 426 cacacacacactccccctctgagcagtgccctctccccacggatgca-cataccagtgcg 484
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 610 cacacacacactccccctctgagcagtgccctctccccacgga-gcaacataccagtgcg 668
Query: 485 cgtgcgcgtggacacacacacacacacacacacacacacac-ac-accaccaccaccacc 542
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 669 cgtgcgcgtggacacacacacacacacacacacacacacaccaccaccaccaccaccacc 728
Query: 543 accaccaccaccagtaccaccacacacttcattcactgccaggtgctggcatctagttcc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 accaccaccaccagtaccaccacacacttcattcactgccaggtgctggcatctagttcc 788
Query: 603 aacctgtgtcctccatagcatc 624
||||||||||||||||||||||
Sbjct: 789 aacctgtgtcctccatagcatc 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 131
Number of extensions: 36
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_n21.g1 MSMg01no120_n21.g1 CHROMAT_FILE:
MSMg01no120_n21.g1 PHD_FILE: MSMg01no120_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:27 2005
(605 letters)
>mm_chr7_135049246_135050250
Length = 1005
Score = 1085 bits (561), Expect = 0.0
Identities = 570/573 (99%), Gaps = 1/573 (0%)
Strand = Plus / Minus
Query: 34 agtgaaatttt-ccttaaaaagaataagctagtaagtaagtacgtacgtatatagtttaa 92
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 agtgaaattttgccttaaaaagaataagctagtaagtaagtacgtacgtatatagtttaa 942
Query: 93 aaacaaactggctggagagatggctcagcagtgaagagcacttgcccttccttatagagg 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 aaacaaactggctggagagatggctcagcagtgaagagcacttgcccttccttatagagg 882
Query: 153 acctgagtttggtccccagcacccacagggtgcacagacacacatgcagacaaaataccc 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 acctgagtttggtccccagcacccacagggtgcacagacacacatgcagacaaaataccc 822
Query: 213 acatgtatagaaataatttaattttaaaagaaaatgaaaacaaagaagaaaccttgctgc 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 acatgtatagaaataatttaattttaaaagaaaatgaaaacaaagaagaaaccttgctgc 762
Query: 273 agactacgcaaggactcaagacacaggcctccctgccggagccacccactccccaccatt 332
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 agaccacgcaaggactcaagacacaggcctccctgccggagccacccactccccaccatt 702
Query: 333 ctagtctcacctggcaaaatccacccacttctcgataatcttcttgggcgacagacgagt 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ctagtctcacctggcaaaatccacccacttctcgataatcttcttgggcgacagacgagt 642
Query: 393 acagatgatgccaacaaaatcaggctggcaggaaagagaaggtcagaactagcaacactt 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 acagatgatgccaacaaaatcaggctggcaggaaagagaaggtcagaactagcaacactt 582
Query: 453 ccacccaacttcagttgccaaatcccacaatttctggaatgccagagcaagccccaagcc 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ccacccaacttcagttgccaaatcccacaatttctggaatgccagagcaagccccaagcc 522
Query: 513 catcctcagccctaagggggcctgtggccaggtgcctttccccatttaacattctcagat 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 catcctcagccctaagggggcctgtggccaggtgcctttccccatttaacattctcagat 462
Query: 573 cagcctcgggtctcggctccaccttgtcttcat 605
|||||||||||||| ||||||||||||||||||
Sbjct: 461 cagcctcgggtctctgctccaccttgtcttcat 429
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
