BAC Information

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BAC

Clone NameMSMg01-120O11
Chromosome7 (Build37)
Map Location 126,152,659 - 126,153,162
singlet/doubletsinglet
Overlap genenone
Upstream geneRps15a, Arl6ip1, 2610207I05Rik, LOC100043339, Syt17, LOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5, Mir16, 6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b
Downstream geneGpr139, LOC100042871, Gp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1, BC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120O11.T7 (MSMg01no120_o11.b1)MSMg01-120O11.TJ (MSMg01no120_o11.g1)
ACCAG331153AG331154
length768705
length of high quality
(start - end)
260 (50 - 309)504 (76 - 579)
definitionCHROMAT_FILE: MSMg01no120_o11.b1 PHD_FILE: MSMg01no120_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:30 2005CHROMAT_FILE: MSMg01no120_o11.g1 PHD_FILE: MSMg01no120_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCATAATTTGCGCCGCTATACGACTCCTATTTCCAAAAATCCGCGNAA
TTCTTAAATTTCATCCTTATGCCTTGCCTCCTGCATGCTGGAATTCANTT
TTGCACCATCAAGGCCAGCTGTGATCTCTCGGCTTTGGGGGCAGAATTAT
GTATCCCTTTTAANCCAGATTTCGTTGTTCTCAAATGTTANTTGCTTCTC
TTCCAACCTTCANTTCTTTGGTTTATCTCCTGTGTGTGTGCTCANTATAA
AAATTGGTATAAATTACTCTATTGATTAGTCTCAAATACNCCTTTCCTCT
CTTTGANATTTTGGTTTTTTTAAAAAAAAACCCNNATTTTCCTCTTCCAT
CTTTTTAAAACTTTTTTATCCCAAATGCATATTCCCTTCCCCTTTTTTTT
TATTTTTCCCCTCTTTTTTTTTTTTGTCTTTTNNNNTTTATTTACCCATA
AANCCTTCAAATTATCCCTTTTATTGGCCCTCCTCTTCTCNCCTNTTACC
CTACTTNTCCTTTTTTTTTTTTTTTTTGAAATNNTNNNNTTTTTNNNNNN
TTTCCCATTTTTTTTTTCCCCTTCTATATTCNCNANNNNNNNNTTTCTTT
TTTTTTTTNTTNNNTTNTNTTTNTTTTTTTTTNNTTTTTTTGGGTTTTNT
TCTTTTTCCTCTCCTCTTTCCACCAACTAAAGTTCTGGAGAGAGACGATA
TAGAGGNTTTTTNNTNNTNNTTTTTTANTNNTTATTTCTTTTCTTCATAG
ATGGACGAGACGAGGGGG
NCCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCGCCATGGTGGACTGCATCCCGC
CCAGTCACCACTCAAACCCTTCCTTTGTTAAGTTGCTTTTGTCAAGTTTT
GATCACAGAGACAGGAAAAGTAACTAATGCAGAAATTGCATACAAACTGT
CCTCTTTCATAAGACTATTTCATGAGAACAGGGGGCATGGGGTCAGTCCC
ATGGCCTCCCACATCTACCTGCTTGCCTCAAATCTCTTTACCCCTGAGCT
GGAGAACACCATCTTCTAAAGAGGCAAAGGAAAGTACACTGCCCTCCCCA
GAGACACGGGCAGTCTCTCTTTGCCCAGGACTCCCTTCTACTAGAGATAA
TAGAGGACTGCCATCCACACCCAGCATGTATCCCAGAGAACAAAGAATGT
TGTGCAGCCTAGAAGAAACCTCAATTGAGGAAATGCTTGCACTAGATTGT
CTTGTGTGCAAGCCTGTAATGCATTTTCTTGATCAATGATTCATGTGGGA
TCACTATGGGTAATGACATTCCTGGACTGGCGGTCCTGGGTTGCATAAGA
ATGCGGCCTGAGCAAACCATAGAGAGTAAGCAAGTGAGCAGCACTCTTCC
ATGGTCTTCCCTTCAGTTCCTGCCTCCAAGTCCCTGCCTTGAGTTCCCTT
AGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_o11.g1 MSMg01no120_o11.g1 CHROMAT_FILE:
MSMg01no120_o11.g1 PHD_FILE: MSMg01no120_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:30 2005
         (504 letters)



>mm_chr7_126152472_126153375
          Length = 904

 Score =  944 bits (488), Expect = 0.0
 Identities = 500/504 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccgccatggtggactgcatcccgcccagtcaccactcaaacccttcctttgttaagttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 cccgccatggtggactgcatcccgcccagtcaccactcaaacccttcctttgttaagttg 632

                                                                       
Query: 61  cttttgtcaagttttgatcacagagacaggaaaagtaactaatgcagaaattgcatacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 cttttgtcaagttttgatcacagagacaggaaaagtaactaatgcagaaattgcatacaa 572

                                                                       
Query: 121 actgtcctctttcataagactatttcatgagaacagggggcatggggtcagtcccatggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 actgtcctctttcataagactatttcatgagaacagggggcatggggtcagtcccatggc 512

                                                                       
Query: 181 ctcccacatctacctgcttgcctcaaatctctttacccctgagctggagaacaccatctt 240
           ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ctcccacgtccacctgcttgcctcaaatctctttacccctgagctggagaacaccatctt 452

                                                                       
Query: 241 ctaaagaggcaaaggaaagtacactgccctccccagagacacgggcagtctctctttgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ctaaagaggcaaaggaaagtacactgccctccccagagacacgggcagtctctctttgcc 392

                                                                       
Query: 301 caggactcccttctactagagataatagaggactgccatccacacccagcatgtatccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 caggactcccttctactagagataatagaggactgccatccacacccagcatgtatccca 332

                                                                       
Query: 361 gagaacaaagaatgttgtgcagcctagaagaaacctcaattgaggaaatgcttgcactag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gagaacaaagaatgttgtgcagcctagaagaaacctcaattgaggaaatgcttgcactag 272

                                                                       
Query: 421 attgtcttgtgtgcaagcctgtaatgcattttcttgatcaatgattcatgtgggatcact 480
           |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 attggcttgtgtacaagcctgtaatgcattttcttgatcaatgattcatgtgggatcact 212

                                   
Query: 481 atgggtaatgacattcctggactg 504
           ||||||||||||||||||||||||
Sbjct: 211 atgggtaatgacattcctggactg 188


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)