BAC Information

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BAC

Clone NameMSMg01-121G13
Chromosome7 (Build37)
Map Location 106,116,376 - 106,116,488
singlet/doubletsinglet
Overlap geneUvrag
Upstream geneGdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir, Wnt11, LOC666978, EG666529
Downstream geneDgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121G13.T7 (MSMg01no121_g13.b1)MSMg01-121G13.TJ (MSMg01no121_g13.g1)
ACCAG331531AG331532
length792779
length of high quality
(start - end)
44 (225 - 268)113 (133 - 245)
definitionCHROMAT_FILE: MSMg01no121_g13.b1 PHD_FILE: MSMg01no121_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:10 2005CHROMAT_FILE: MSMg01no121_g13.g1 PHD_FILE: MSMg01no121_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGGGGGGGAGGGGGCGCCCCGGCATCCCCCCAAACCCCAAATGACTA
ATTCCTCTATAATTGCGGCGCTAATACGACTCCTATCCGAANNGAGGCGC
GGAATTCCTTGTTTTCGAAAAATGAGTGTGTGAGGAGGGGAGTAGAGGGA
AGGGAGCTTCGGGTGAGTCACCATGCATCCCCTCACTCTCACACTTCAGG
GCCTTCGACTGTCTGGGGGAGGAGGCTCGGTTGGGGGACCCTCTGCCCAG
GGGCCCCTTGATCCTTGTGTGAGAAACTCTGACAGCCTGTGTGGGTCTGA
GTTTTTGGAGGTGATGAGAGTTGCATTTTGCTATGGGCCGGGTGCGCGCC
AAAGATAATATCACAGTTTTGTTTTTTTAAGCGAAGCCCTATTTTAATAT
ATCAACTTTTTTTTTCTCCCCCCCCCCCCCCGATTGTTATTTATATTTAG
ACATGTGTCCTCTCGAGCGAAAAAAGTAAATACATCCCTAGTGGGGGGCT
GGGGATCACCCCATGACCAACCTCTTTTTTGTGCATATTTTACTACCACA
CCTCTTCACACTTTCTTTTTTTCTTTTTTCGGGATACCGCTCCCGTATTT
TTAATATATTTTTGAGAATCAACAATACAACGACAGAGCCTCACATTTTA
GCATTCATTATTGTTTCTCTCTACACTTTTTTGTTAAAAATCCCCCCAAC
ACTTTTTTTCTATAAATTACCACCTATTCAACCGCCGCCCCACTAATTTT
TTTTATTTTCTAAACCTGTCATAAACACACGCTATTATTTTA
CTTTTTTATTTTTTNTTTATTTTNTTCCTTATATTTCACTNGCTATCTTT
TCGCTNTATCTCGATGATGTGTGTGGCCTGGCGGCCGTCTGTTTCGACAA
CTTCCGGTGAACTATAGATTTTCCCAAAAATTCCCAGAAAGGAGACGGGG
TGAAGGGATAATGTATTTAGTGACTGGTGGGCTGTGGTCTAAGTGAAATC
GTGTTACATTATTAGAATGTATGACATCATGTTTGTCACAGGTGGCCCCA
GAATATCTTTGAGGTATGCCATGGGCTGGCTTTGCAGTCTTTCACATTAT
CACAGACTGCTTATGTGCTGTGGACTCTGGCAGGATTGTTCGAGACTTTG
CTGATGTTTTATTGAAAGACACACTATTTTTTTTTTTCGTTCTGAGGCAT
ATGATGGAAAAGGTTTTGAGTGCTCCCCCCCCCCCCCCCCACTAAGAATT
TAGTGTTTGTTGTAGATGTTTTGTGAGGAATAAAAAAAAAAAACTAAAGG
GGGGGGGGCTGTGGTTGATCACTCTGGTGCCTCTGTTTTACTTTCCCTCT
CGCTTCTGTTATTTTTACGCTTTTTCCTCCCCTCCGCTTTTCTTTTTTTA
TTTGCTCACTTTTTTACTTTTTGTGAAATATTTTCGCAGATGTCCCCTTT
TTTGTATTTTTTCCGATACTGTTTTATCAATGCGCCCTTAGAAATAATGT
TACCTTGCCCGGTTATCCCTTTTTTTTTCTTTTGCTTGTTTTTTTCTCCT
TTTTCTTGTTTCTCCCCTCTCCACCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_g13.g1 MSMg01no121_g13.g1 CHROMAT_FILE:
MSMg01no121_g13.g1 PHD_FILE: MSMg01no121_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:10 2005
         (113 letters)



>mm_chr7_106116176_106116688
          Length = 513

 Score =  211 bits (109), Expect = 1e-59
 Identities = 112/113 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccagaaaggagacggggtgaagggataatgtatttagtgactggtgggctgtggtctaa 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cccagaagggagacggggtgaagggataatgtatttagtgactggtgggctgtggtctaa 254

                                                                
Query: 61  gtgaaatcgtgttacattattagaatgtatgacatcatgtttgtcacaggtgg 113
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gtgaaatcgtgttacattattagaatgtatgacatcatgtttgtcacaggtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 113
Length of database: 513
Length adjustment: 8
Effective length of query: 105
Effective length of database: 505
Effective search space:    53025
Effective search space used:    53025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)