BAC Information

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BAC

Clone NameMSMg01-121K03
Chromosome7 (Build37)
Map Location 61,990,031 - 61,990,477
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668789, Mrps33p, LOC622146
Downstream geneLuzp2, LOC668796
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121K03.T7 (MSMg01no121_k03.b1)MSMg01-121K03.TJ (MSMg01no121_k03.g1)
ACCAG331696AG331697
length684678
length of high quality
(start - end)
293 (61 - 353)450 (47 - 496)
definitionCHROMAT_FILE: MSMg01no121_k03.b1 PHD_FILE: MSMg01no121_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:28 2005CHROMAT_FILE: MSMg01no121_k03.g1 PHD_FILE: MSMg01no121_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTAATACACTCACTATTCGGAGAGGACCGCGGAATCTTTGTTTT
CTCTGAGCCCATTTTTTATGGGGTTATTTGATTTTCTGGAGCCACCTTCT
TGAGTTCTTTATATATATTGGATATTAGTCTCCTATCTGATTTAGGATAG
GTAAAGATCCTTTCCCAAACTTCTGGTTGCCTTTTGGTCTTATTGACGGT
GTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATTAGGTCCCATTTGTCAA
TTCTCGACCTTACATCACAAGCCATTGTTGTTCTATTCTATACCTCTCTG
TTGCTATACCAGTACCATGCAGTTTTTATCACAATTGCTTTGTATTACAG
CTTTACGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAA
GAGTTTTTGCTATCCTAGGTTTTTCCTTATTCCAGATGAATTTGCAGATT
GCCCTTGCTAATTCATTGAAGAATTGAGTTGAAATATCGATGGTGATTGC
ATTGAATCTGTATATTGCTTTGGCAAGATAGCCATTTTTACTAAATTGAT
CCTGCCAAATAATGAGAACGGGAGATCTTTCCATCTTCTGAGATCTTCTT
TAACTCCTTTCTTCAGAGACCTGAAGCTCTTATCCTTACGGACCTTTCAC
TTCTTTCAGTAGAGTCCCGCCCAGATATTTTATT
GGCGGCCGCCTGGTCACAAATTGAGGTGACCTATAGAAGTTTCGCGAAAT
TCCTAAGGATGCCTGCTGCCTGGGACAGGCACCCGATTGTACAACAGTGG
CAGACTCCCAAATCATAGGACGCTGTAACTGCACAATTCAGAGATGTCTG
ATGAAGTAAGCGGAGGATACCATGGGATGTCTGAGAGGCAGTGTGTCAAA
CAAACTGTGCAGCTGTCACCAGACAGGGTCTATGTCTCACAGAGCTGACT
GAAGCCACCACTGCTAGATGACTAATCACTTGAGAATTATGCAGAATTGA
TAGGAACTTTTTAGTTCCTCAGACTTTAAATCAAAGTTCAGGAAAATCTG
GAGAAATATGCATTAGATGGACAGACTTCTGCTGTAGCTGGGAGTATGAG
TGGGGTCAGCATCAGGTCTGAATGCTAGCCAGGGCTGTTGGTTAACATGC
TAAAGTAGTTCTAGGGTTGTTCAAGTCTCTGAGTGTTAATTCGGGTATTC
CTCACAACAGTCTTACGAGAAGAATTAAGTGCTATTATAACTCATCTCAA
ATGCTCCAGTGCTGATTAAAGAAGGTAAGTATGGGGGTGGAAAGATGGTT
CAGCCATTAAAGGCTCTGACTCACACCTAAAAGGACAAGAGAAGCTAATT
ATCCAATACGGTGTACCAAAATGGCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_k03.g1 MSMg01no121_k03.g1 CHROMAT_FILE:
MSMg01no121_k03.g1 PHD_FILE: MSMg01no121_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:28 2005
         (450 letters)



>mm_chr7_61989830_61990677
          Length = 848

 Score =  810 bits (419), Expect = 0.0
 Identities = 441/449 (98%), Gaps = 2/449 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   aattcctaaggatgcctgctgcctgggacaggcacccgattgtacaacagtggcagactc 61
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 aattcctaaggttgcctgctgcctgggacaggcacccgattgtacaacagtggcagactc 589

                                                                       
Query: 62  ccaaatcataggacgctgtaactgcacaattcagagatgtctgatgaagtaagcggagga 121
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 588 ccaaatcataggacgctgtaactgcacaattcagagatgtctgatgaagtaagcagagga 529

                                                                       
Query: 122 taccatgggatgtctgagaggcagtgtgtcaaacaaactgtgcagctgtcaccagacagg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 taccatgggatgtctgagaggcagtgtgtcaaacaaactgtgcagctgtcaccagacagg 469

                                                                       
Query: 182 gtctatgtctcacagagctgactgaagccaccactgctagatgactaatcacttgagaat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gtctatgtctcacagagctgactgaagccaccactgctagatgactaatcacttgagaat 409

                                                                       
Query: 242 tatgcagaattgataggaactttttagttcctcagactttaaatcaaagttcaggaaaat 301
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tatgcagaattgagaggaactttttagttcctcagactttaaatcaaagttcaggaaaat 349

                                                                       
Query: 302 ctggagaaatatgcattagatggacagacttctgctgtagctgggagtatgagtggggtc 361
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ctgga--aatatgcattagatggacagacttctgctgtagctgggagtatgagtggggtc 291

                                                                       
Query: 362 agcatcaggtctgaatgctagccagggctgttggttaacatgctaaagtagttctagggt 421
           |||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 290 agcatcaggtctgaatactatccagggctattggttaacatgctaaagtagttctagggt 231

                                        
Query: 422 tgttcaagtctctgagtgttaattcgggt 450
           |||||||||||||||||||||||||||||
Sbjct: 230 tgttcaagtctctgagtgttaattcgggt 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 848
Length adjustment: 10
Effective length of query: 440
Effective length of database: 838
Effective search space:   368720
Effective search space used:   368720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)