Query= MSMg01no121_m07.b1 MSMg01no121_m07.b1 CHROMAT_FILE:
MSMg01no121_m07.b1 PHD_FILE: MSMg01no121_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:39 2005
(285 letters)
>mm_chr7_135534059_135534743
Length = 685
Score = 524 bits (271), Expect = e-153
Identities = 280/285 (98%), Gaps = 4/285 (1%)
Strand = Plus / Plus
Query: 1 agaggcatggatgggggttctctttggagtgttgagaagatttgggatccggtaagtggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 agaggcatggatgggggttctctttggagtgttgagaagatttgggatccggtaagtggt 264
Query: 61 cgtgcctgcacagcattgtgaatacattcggtgccatggagacactccaaacaaaggttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 cgtgcctgcacagcattgtgaatacattcggtgccatggagacactccaaa----ggttt 320
Query: 121 ttaattatgtgtgtttcaccaggacaaataaagtctcatgaaactacccatatgtacatg 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaattatgtgtgtttcaccaggtcaaataaagtctcatgaaactacccatatgtacatg 380
Query: 181 cattgccaccagcgcctgctgtgccatggacatgctaagcctgcttcccttcccttaacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattgccaccagcgcctgctgtgccatggacatgctaagcctgcttcccttcccttaacc 440
Query: 241 tcttggtctttctcccctgttaatgctggtttcctgatgaggacc 285
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttggtctttctcccctgttaatgctggtttcctgatgaggacc 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no121_m07.g1 MSMg01no121_m07.g1 CHROMAT_FILE:
MSMg01no121_m07.g1 PHD_FILE: MSMg01no121_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:39 2005
(374 letters)
>mm_chr7_135656581_135657357
Length = 777
Score = 621 bits (321), Expect = 0.0
Identities = 362/377 (96%), Gaps = 5/377 (1%)
Strand = Plus / Minus
Query: 2 taaaatccctccctccctccctttc-ccgccccctccctcctctgcttctctgggaaacc 60
||||||||||||||||||||| ||| | ||||||||| ||||||||||||||||||||||
Sbjct: 617 taaaatccctccctccctccc-ttctctgccccctccttcctctgcttctctgggaaacc 559
Query: 61 ttgactaactgcaaatgagttgcagtgatcatcagaggctgtaactggagtttttagggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttgactaactgcaaatgagttgcagtgatcatcagaggctgtaactggagtttttagggg 499
Query: 121 aaaagcacggactcacacagctccaaaagagctaaggacctgccgtctgccgcccagcac 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 498 aaaagcacggactcacacagctccaaaagagctaaggacctgccgtctgccggccagcac 439
Query: 181 aacacaccagttttagagacaagtgagcatggaaagtagggaaaggcaattgattcagag 240
|||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct: 438 aacacaccagttttagagacaagtgagcgtggaaagcagagaaaggcaattgattcagag 379
Query: 241 tgacagtgtcgggaagttggggcggg---gggagggggagactaaggggggccagtgagc 297
|||||||||||||||||||||||||| ||| ||||||| ||||||||| |||||||||
Sbjct: 378 tgacagtgtcgggaagttggggcgggcgggggggggggaggctaagggggtccagtgagc 319
Query: 298 tggagttcatcttctgagcactgactcgaagtttaggtttaaatagagaaaggatggggg 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tggagttcatcttctgagcactgactcgaagtttaggtttaaatagagaaaggatggggt 259
Query: 358 tgaaggtgggagtggga 374
|||||||||||||||||
Sbjct: 258 tgaaggtgggagtggga 242
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 777
Length adjustment: 9
Effective length of query: 365
Effective length of database: 768
Effective search space: 280320
Effective search space used: 280320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
