Query= MSMg01no121_o24.b1 MSMg01no121_o24.b1 CHROMAT_FILE:
MSMg01no121_o24.b1 PHD_FILE: MSMg01no121_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:53 2005
(530 letters)
>mm_chr7_79079355_79080284
Length = 930
Score = 994 bits (514), Expect = 0.0
Identities = 526/530 (99%)
Strand = Plus / Plus
Query: 1 atggattttaagaaaaatttcataatttaacaaacaccaaggctctaaaacctcttctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggattttaagaaaaatttcataatttaacaaacaccaaggctctaaaacctcttctta 260
Query: 61 ctacacaaaaacaatcatctgtcatccaatggacttacaacgttgatatctctaactctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctacacaaaaacaatcatctgtcatccaatggacttacaacgttgatatctctaactctt 320
Query: 121 caacttaatttctttgcattttatggagaacatattgattctaactaggttgttcttcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacttaatttctttgcattttatggagaacatattgattctaactaggttgttcttcaa 380
Query: 181 ataacttaaatataccctgctccttagtaacaacatcaacaaccataataaaaagcaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataacttaaatataccctgctccttagtaacaacatcaacaaccataataaaaagcaatt 440
Query: 241 gtactcttttataatgattattatagagcaaacatttatgcaacaatttgagcacatgac 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtactcttttataatgattattatagagcaaacatttatgcaacaatttgagcacatgat 500
Query: 301 caatctttaccttagtctatggcaatgcaattcatttcctgtttaacagtgagaaatctg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taatctttaccttagtctatggcaatgcaattcatttcctgtttaacagtgagaaatctg 560
Query: 361 aggctcagggactttcaaatgaatggcctaaagttgtttagctaataagtgacaaaggtg 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggctcagggactttctaatgaatggcctaaagttgtttagctaataagtgacaaaggtg 620
Query: 421 agttctgaagtcatggattcttctgctgtataagtatagacttctaacatcttactacat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agttctgaagtcatggattcttctgctgtataagtatagacttctaacatcttactacat 680
Query: 481 gaaactgctttcctaggctacggagaggggaagaatgaaaaccatcagaa 530
||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 681 gaaactgctttcctaggctacagagaggggaagaatgaaaaccatcagaa 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no121_o24.g1 MSMg01no121_o24.g1 CHROMAT_FILE:
MSMg01no121_o24.g1 PHD_FILE: MSMg01no121_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:53 2005
(589 letters)
>mm_chr7_79220718_79221711
Length = 994
Score = 1033 bits (534), Expect = 0.0
Identities = 579/602 (96%), Gaps = 17/602 (2%)
Strand = Plus / Minus
Query: 1 ttctaagtcagttatagtgttcctgataaaagcaaatggtgtcctggactttgatattgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttctaagtcagttatagtgttcctgataaaagcaaatggtgtcctggactttgatattgc 561
Query: 61 tgcatagtgatagaaagtataaaagtctaattgggagattataagaaatgagaaattggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgcatagtgatagaaagtataaaagtctaattgggagattataagaaatgagaaattggc 501
Query: 121 atgttcttgactggggagacagcagggttaaagatgactatttgattcaagcaaacaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atgttcttgactggggagacagcagggttaaagatgactatttgattcaagcaaacaaat 441
Query: 181 gttaataatttacaggcttccttcaagtctagagagagaacgtggaatggacacaaaagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gttaataatttacaggcttccttcaagtctagagagagaacgtggaatggacacaaaagc 381
Query: 241 tgacaaaaagagaagtcaaacccggacagctgatacacac------agtaaatactatgt 294
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 380 tgacaaaaagagaagtcaaacccggacagctgatacacacagagagagtaaatactatgt 321
Query: 295 cagatgctacgtcatttaactgcataatggccatttatgtaaaatggtcctgagctattt 354
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 320 cagatgctacgtcatttaactgcataatggccatttatgtaaaatggttctgagctattt 261
Query: 355 ttatgttaatttggataaaatattgacccccccttatctcatagacaaatatcagtttag 414
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 260 ttatgttaatttggataaaatattga-ccccccttatctcatagacaaatatcagtttag 202
Query: 415 caaaaataaaatttccaaatattttaaaacataatttaagaaa-----ttttaaaaaaaa 469
||||||||||||||||||||||||| ||||||||||||||||| |||| |||||
Sbjct: 201 caaaaataaaatttccaaatatttttaaacataatttaagaaattttttttt---aaaaa 145
Query: 470 ttgagagcttatctctactacaatctatgggg--aaaaaagtagagaatcccggtgtaag 527
|||||||||||||||||||||| ||||||||| |||||||||||||||| || ||||||
Sbjct: 144 ttgagagcttatctctactacagtctatggggaaaaaaaagtagagaatcacgatgtaag 85
Query: 528 aagaaagtgtacagggttgtggagaaatggcgtgagtcagtgttgaaagtgagactgaag 587
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 84 aagaaagtgtacagggttgtggagaaatggcgtgagtcagtgttgaaggtgagactgaag 25
Query: 588 cg 589
||
Sbjct: 24 cg 23
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 994
Length adjustment: 10
Effective length of query: 579
Effective length of database: 984
Effective search space: 569736
Effective search space used: 569736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
