BAC Information

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BAC

Clone NameMSMg01-122A02
Chromosome7 (Build37)
Map Location 102,477,650 - 102,478,441
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666816, LOC100040132
Downstream geneLOC666823, Frda-ps, EG666836, Odz4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122A02.T7 (MSMg01no122_a02.b1)MSMg01-122A02.TJ (MSMg01no122_a02.g1)
ACCAG331977AG331978
length1,0541,068
length of high quality
(start - end)		805 (38 - 842)737 (85 - 821)
definitionCHROMAT_FILE: MSMg01no122_a02.b1 PHD_FILE: MSMg01no122_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:59 2005CHROMAT_FILE: MSMg01no122_a02.g1 PHD_FILE: MSMg01no122_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTATANNNNTAACAGTGGGCGCTATAGACTCACTAAGGGAGAGGATCCG
CGGAATTCTTCAAAGAATAAGACACTTCCTTCGATGCTTAGAGCCCTCAA
TCTGGTTCTCATACTAAGTCTGTGTGAGCACTGGGCTCTAGTCTTATCCT
TGTACACTAAGGGACTTTCTACACTGGTAAAGTGACCAAGTTGTGGATTA
AATCAGCATTGCACCATGAAGCTGAAATTGTCCAAATGAGAGGCAGAGAA
GTGTGAATGAGAGGGGAGGTGTTGCAGGTGTCGCAGTTACTCATTTTTGA
CAACTATCAAAAACGCCTTTTATTTTAACAGCATTTATAATTAATATGTC
ATTTCATGTAGTTACCAATCCTTTGTAGCTAGACTGGACAGAGTTGGTAT
GACTAAAGGCCAAATGATTGAGGACCTAAGAAATTTCTTCTTATCAGAAA
CTAGTCATTAAAATCCCAGCAGCCGACTACAGACTTTGGGCTTTGTCCTT
AGGATCTTATCACTGGGCTTCACAGTCTAAGAATAAAGATCTGAAAGACA
GACAAGTCCCATAATTAGTATAGCTGGCACTGGCATTCTCCTTTAAATAA
AATTATTTTAGTGAAACTTTTCTTGGTTGAAGAAAAACATAGCATGCAAA
AGATAGAAGTTATAAACCAAAAATTGAATTTAAGAAGGCAGCAAGAAGTC
TCCAGCTTCTCTGTACTTCTCTCCGGTTTTGCTATTTGTTTATTTTAGCA
ACAGGGCATGTAAGAGAACATTGTATAGAGTAACTATAGCCAGAATATGA
CTGATTTCAGTGATGTTACAAATGCTATTTTTCCTCATTGGTGAAATCTG
ATTCTATTTTTTAATGAAGAAAAACAACTTAAAATATCCAGAGGACCCTG
GTAAAGCAGAGGAAAGCCAGATGGCTCAGGGTAAATCAAAACAGCAGAAG
AGATATTGCCTGTCTAGGCTTTGGGTTTTAGTGGTCTCCAAAAATAAAGC
TTGCCATTGTTCCTGGAAAGAACAATTAAGGGCCCAAAGGGTTTTTCTCC
CAGC

CAAATATANNTNAAAAGATGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGTTAATATTTTTGAAAT
GGGTGGGTGGCACCATCCTTCAACCGGGATCCGTGCCTAACCTCTGGATA
TGGTCTCTACAGGTTCTCTCTTCCCTTTGTTGGATATTTCAGCTAATTTC
ATCCCCATTGGCTCTTTGGAGCCTATATTTAATTATTTTTATATTGTGTC
ATATTTTATTATATTTATTATACTGTATATTTTATATTATTATACCTTAG
AAGTCTGTTTGTTTTCTGAGACTGGTGGAAGATCTGTATGGGAGGGGAGG
TATAGAGAAACCTGGAAGTTTAAAGGAGGAATAAATGGCAATCAGGATGT
ATTATGTGAGAAAAAAATCTATTTTCAATAAAAGGGGAGAAAATAAAGAC
ATTAAAATCCTAAGCATGTATGTGCCAATCTCTGATGTACCCAATTTCAC
ACAAAAGTCTTGCTAATGAAATTAAAAAACAGATCATCATAAGCTCTTTA
ATAGTAGGTGATTTCAATACTCTCTCCAATTGACAGGTTATCAAAGAAAT
TTCTCTTTATAACTGAGAGAGGCACAAACCTGGTCAAAATGCAGAGAACA
AGTGATCATTATGGAGTGCCCAAGCAGAACTGATAACATCTATAGCTGGG
TCAGAAACATAGTAAGAGCCAGAGGACCAGGAAGTCTGCTATGAGCTCGT
GTCTTCTAGAAATGAGAGGAGAGTTTTACCAATGCATCTCAACAATATGG
TAAATGAATCAAGCCATGAGCAAGTAAAATACCAGTATATATGGTAACAT
AGAAGGGAAAAATTCTGGTTTTGTTCCACTGTAAACAGAACTACAGAGCG
CTTAATTAAGTTGAGAGCAGGATAAGTAAATCTTCCTTTGAATGAGCACA
CCTAACTGGTTTACCCGGTATCCAGTTATTTATTTCTTGAAATTTCACAC
TTCCCACTTCATTCCATCTTTCATCGCATTACTCCACTTCTTTTTATTTT
AACTCGAATTCATGTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_a02.b1 MSMg01no122_a02.b1 CHROMAT_FILE:
MSMg01no122_a02.b1 PHD_FILE: MSMg01no122_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:59 2005
         (805 letters)



>mm_chr7_102477435_102478641
          Length = 1207

 Score = 1485 bits (768), Expect = 0.0
 Identities = 786/794 (98%), Gaps = 6/794 (0%)
 Strand = Plus / Plus

                                                                        
Query: 16   gaattcttc-aaagaataag---acacttccttcgatgcttagagccctcaatctggttc 71
            ||||||||| ||||||||||   |||  ||||||||||||||||||||||||||||||||
Sbjct: 216  gaattcttcaaaagaataagaaaaca--tccttcgatgcttagagccctcaatctggttc 273

                                                                        
Query: 72   tcatactaagtctgtgtgagcactgggctctagtcttatccttgtacactaagggacttt 131
            |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274  tcataagaagtctgtgtgagcactgggctctagtcttatccttgtacactaagggacttt 333

                                                                        
Query: 132  ctacactggtaaagtgaccaagttgtggattaaatcagcattgcaccatgaagctgaaat 191
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334  ctacactggtaaagtgaccaagttgtggattaaatcagcattgcaccatgaagctgaaat 393

                                                                        
Query: 192  tgtccaaatgagaggcagagaagtgtgaatgagaggggaggtgttgcaggtgtcgcagtt 251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394  tgtccaaatgagaggcagagaagtgtgaatgagaggggaggtgttgcaggtgtcgcagtt 453

                                                                        
Query: 252  actcatttttgacaactatcaaaaacgccttttattttaacagcatttataattaatatg 311
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454  actcatttttgacaactatcaaaaacgccttttattttaacagcatttataattaatatg 513

                                                                        
Query: 312  tcatttcatgtagttaccaatcctttgtagctagactggacagagttggtatgactaaag 371
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514  tcatttcatgtagttaccaatcctttgtagctagactggacagagttggtatgactaaag 573

                                                                        
Query: 372  gccaaatgattgaggacctaagaaatttcttcttatcagaaactagtcattaaaatccca 431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574  gccaaatgattgaggacctaagaaatttcttcttatcagaaactagtcattaaaatccca 633

                                                                        
Query: 432  gcagccgactacagactttgggctttgtccttaggatcttatcactgggcttcacagtct 491
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634  gcagccgactacagactttgggctttgtccttaggatcttatcactgggcttcacagtct 693

                                                                        
Query: 492  aagaataaagatctgaaagacagacaagtcccataattagtatagctggcactggcattc 551
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694  aagaataaagatctgaaagacagacaagtcccataattagtatagctggcactggcattc 753

                                                                        
Query: 552  tcctttaaataaaattattttagtgaaacttttcttggttgaagaaaaacatagcatgca 611
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754  tcctttaaataaaattattttagtgaaacttttcttggttgaagaaaaacatagcatgca 813

                                                                        
Query: 612  aaagatagaagttataaaccaaaaattgaatttaagaaggcagcaagaagtctccagctt 671
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814  aaagatagaagttataaaccaaaaattgaatttaagaaggcagcaagaagtctccagctt 873

                                                                        
Query: 672  ctctgtacttctctccggttttgctatttgtttattttagcaacagggcatgtaagagaa 731
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874  ctctgtacttctctccggttttgctatttgtttattttagcaacagggcatgtaagagaa 933

                                                                        
Query: 732  cattgtatagagtaactatagccagaatatgactgatttcagtgatgttacaaatgctat 791
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934  cattgtatagagtaactatagccagaatatgactgatttcagtgatgttacaaatgctat 993

                          
Query: 792  ttttcctcattggt 805
            ||||||||||||||
Sbjct: 994  ttttcctcattggt 1007


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 805
Length of database: 1207
Length adjustment: 10
Effective length of query: 795
Effective length of database: 1197
Effective search space:   951615
Effective search space used:   951615
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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