BAC Information

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BAC

Clone NameMSMg01-122D17
Chromosome7 (Build37)
Map Location 37,221,753 - 37,359,130
singlet/doubletdoublet
Overlap genenone
Upstream geneCcdc123, Slc7a9, 2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507, LOC100043872, EG668988, LOC668507
Downstream geneTshz3, LOC100043874, Zfp536
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122D17.T7 (MSMg01no122_d17.b1)MSMg01-122D17.TJ (MSMg01no122_d17.g1)
ACCAG332145AG332146
length1,0961,143
length of high quality
(start - end)
250 (453 - 702)313 (128 - 440)
definitionCHROMAT_FILE: MSMg01no122_d17.b1 PHD_FILE: MSMg01no122_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:28 2005CHROMAT_FILE: MSMg01no122_d17.g1 PHD_FILE: MSMg01no122_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,221,753 - 37,222,002)(37,358,818 - 37,359,130)
sequence
CTTTTTTTNNNNATCATTGGGCGCTATAGACTCCTATAGGGAGAGGATCC
GCGGAATTCCGACATGTGTTTTCCCTTTGAGATCCTGAGACAGTTCCCAG
CCTCTCATTGGTACTTTCACAACAGGTGCTCTATCAGTGAGCCAATCTTA
AATTGAGAGAACCCAGCAAGTTATGTCGCCTCAGATGCCTGAGTGCGTCT
CTACACAGTCACAGGACCAAAATCTCTCTGGACTAATGAAGCTTATATAG
CTGAGGGCTGGGGTAGTAGCTCTGTGGTAGAGCACCCGACCAACCTGAGC
ATGCCCTGGTTCAAGCTCAGTCCCCAGTACTGGGTGTTACCTTAGCCACT
TGGAGAATCAAGTGTGTGAGTCTAGCCAATCATGTGAGCACCGTGATTAT
TGCTCATCCCTGTTAGACAGACCTGGGATGCCCACAATGGCACTATGATG
TACTATACAAGCAGCAGATTTGTAGAGGATCTATTGAGAGTGTTTTAATA
GCCAGAAAATCTTTACTGCTTTGCAATTCTGTTCTAAGGGGTAATTATTT
TTGAGTTGTAATGACCTAGTCAATGTGCTTGCCATTGGCTTACAAATATA
TAGCATTTGTTGATAACTGTAAGGTTTTCTTAGTCTGATGCGTTTATCTT
TTTGGTGTTCTTTTTCCATATAAAAGCCTCCTCCCTTTCCACTATTTCAT
GGGAAACCTAGCAGAGGTTGTCAAGGATTCATTCAGTCTCCACCCAGCCC
ACCTTGGCACCTTCAGAATTAAAGTGCTGGGAGGCAGGGTTAGCATAAGG
AGATGGGACCTGTGTGTGGAGAATGCACGAAGCTGAAGGACTTTCTCCTC
TGGAATCCTGGGGTTAAACAGGACTTAGTGGCCCCTGTGTGTGAACTCTC
CTGTGTGAGCCCCGTGGACAAGCTTTGGCCATCAAAAACCATAAACCTGT
CTCTGAAATTACCCCCGGAACTTGGGAATCTTAATGCTCCCACCCCGAAA
ACTGGCTTTTGGCCCCCGGGGTAAATGTCCCCTTTTTATTTAAATTAACT
TTGTCCCCTGTTTTATGATATTTGGAAATCCCGTTGTCCTCCACCT
TTTCATANNNNAATCATGTGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAGCAACTTTTCTTATTTATA
TTTGTTTGTAAATACCGTAAAGGAACTTGACTGTAACCAAGTTATACGTA
GTCTTTATTATATAAAATATTTCAAATTTTGCTGACCCCATAACTGTATA
CAATTGAAGAGTAAATATCTGCTTCAGTCTTTCTTTCTCTCCAATTCCAG
TTTTGTTAGACTTTCACGATCTTATTTATAATTAACGCTAATATTGACAT
TTCCTGCACATATAAGCATTATATGCCGTTGTTTTCATTACTCTCTGTTG
CTGTGACAAGAGCAACTTACTTTATATTAGTTTATGGTTTTACCAGATTT
TATTTTAGTTTACAGTTCCAGAGGAGAGCTCAACATAGCCAGGGTATGTT
TTTTTCCCCCCCGCAGCAGGAGAAGGAAGCTGATAAAAAGGGTGTTCGAG
TTTAGCCATATACTGGGAAAAGAGTGAACGAACAGAAAGTTGGGTGAGGG
TATAAAACCTGAGGGCGACCTCCAATGACGTACTTCCCCTAACAAGGCTC
CACCTCCTAATGGTTCAGTACCCTTACCTAAATAGCGCCACCAAGTGGAA
TCAGTTGTTCAAAGACGTTAGCTTATGAGGAACACTTCTCTCACAAATCT
TGAAGAATGATCTACTGATTTCTTATTCTGTTATTGCATTTTTGTTCTCA
CAAGTCCTCTATCTTAATTTCCCTCCTCTATCTGCTGGCTATCTTCACAT
CACAGCTGCCGGTTAATTGGTTATAGAAATTTTATACTTATAATTGACGG
CGTTTGTTTTTCGGCCCCATCCATGCAGTATTACTCTTGTGCCTTCTCCC
ATTGGTCCCATTGCTTTAATTTCTTTACCCGTAACTTCCTGGTTCTTCCC
GCCTTTATTAATATCATTATCTTCTTTACTGCTTTGTAAAAAAATGTCCT
CTCGTCTGCTGTCTTTTGAATTTAACCTTTTGATCTTGCCCCGGGTAAAT
CCCTTTCCCTTCGTGGTTTATGAATTTGAATTTTTTGTATTNAATAATAT
TCTACTGGTTTGCCTCTTCTCTTTAATCCCTGTCTCTATATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_d17.b1 MSMg01no122_d17.b1 CHROMAT_FILE:
MSMg01no122_d17.b1 PHD_FILE: MSMg01no122_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:28 2005
         (250 letters)



>mm_chr7_37221553_37222202
          Length = 650

 Score =  476 bits (246), Expect = e-139
 Identities = 249/250 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatacaagcagcagatttgtagaggatctattgagagtgttttaatagccagaaaatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ctatacaagcagcagatttgtagaggatctattgagagtgttttaatggccagaaaatct 260

                                                                       
Query: 61  ttactgctttgcaattctgttctaaggggtaattatttttgagttgtaatgacctagtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttactgctttgcaattctgttctaaggggtaattatttttgagttgtaatgacctagtca 320

                                                                       
Query: 121 atgtgcttgccattggcttacaaatatatagcatttgttgataactgtaaggttttctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtgcttgccattggcttacaaatatatagcatttgttgataactgtaaggttttctta 380

                                                                       
Query: 181 gtctgatgcgtttatctttttggtgttctttttccatataaaagcctcctccctttccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctgatgcgtttatctttttggtgttctttttccatataaaagcctcctccctttccac 440

                     
Query: 241 tatttcatgg 250
           ||||||||||
Sbjct: 441 tatttcatgg 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no122_d17.g1 MSMg01no122_d17.g1 CHROMAT_FILE:
MSMg01no122_d17.g1 PHD_FILE: MSMg01no122_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:28 2005
         (313 letters)



>mm_chr7_37358618_37359330
          Length = 713

 Score =  567 bits (293), Expect = e-166
 Identities = 308/313 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgactgtaaccaagttatacgtagtctttattatataaaatatttcaaattttgctgacc 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 513 tgactataaccaagttatacgtagtctttattatataaaatatttcaaattttgctgagg 454

                                                                       
Query: 61  ccataactgtatacaattgaagagtaaatatctgcttcagtctttctttctctccaattc 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 caataactgtatacaattgaagagtaaatatctgcttcagtctttctttctctccaattc 394

                                                                       
Query: 121 cagttttgttagactttcacgatcttatttataattaacgctaatattgacatttcctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cagttttgttagactttcacgatcttatttataattaacgctaatattgacatttcctgc 334

                                                                       
Query: 181 acatataagcattatatgccgttgttttcattactctctgttgctgtgacaagagcaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 acatataagcattatatgccgttgttttcattactctctgttgctgtgacaagagcaact 274

                                                                       
Query: 241 tactttatattagtttatggttttaccagattttattttagtttacagttccagaggaga 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 273 tactttatattagtttatggttttaccagactttattttagtttacagttccagaggaga 214

                        
Query: 301 gctcaacatagcc 313
           |||||||||||||
Sbjct: 213 gctcaacatagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)