BAC Information

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BAC

Clone NameMSMg01-122F19
Chromosome7 (Build37)
Map Location 76,351,203 - 76,351,934
singlet/doubletsinglet
Overlap genenone
Upstream geneIgf1r, C330024D12Rik, EG434197, LOC100041800, EG384639, Arrdc4
Downstream geneLOC384741, EG665410
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122F19.T7 (MSMg01no122_f19.b1)MSMg01-122F19.TJ (MSMg01no122_f19.g1)
ACCAG332244AG332245
length1,0731,109
length of high quality
(start - end)
732 (89 - 820)330 (462 - 791)
definitionCHROMAT_FILE: MSMg01no122_f19.b1 PHD_FILE: MSMg01no122_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:44 2005CHROMAT_FILE: MSMg01no122_f19.g1 PHD_FILE: MSMg01no122_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATATTTTNNNNAAACAGTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCACTTAAAAGTTCCCCTTAATTAAGGTGTCCAAAACCA
CTGATGGAGAAGGTTTCATCTCACTTATCACCTCATTCTCCTGATGGGAA
AACCAAGACTCTAACAGGTGAGCAATGATGGAAGAAAAGAACAATAACCA
CTAAGCCAGACAGGCCTGTGATTTCAACTGAATTTTTGCCCTTTATAGGA
AGTGTAAGTTCTGACAGAAACAATTAAGTTCTCTCACCCTCCACCGACTC
TACATGATGCATTTTAATTGGCTTGTTTGGCATTTCTTAAAGTAAATCCC
GCTGATACACTTGTTTCACTGGCTGCTTAAATGTGTTAAATGAAAATAAA
TAAATTTCAGGGTCCAATAAGTCTTGAAAATACTGGTTTAAAGTAGAGTT
AGGCCAATCCCTTTACTTCCAAACCCTCAGAGTCTCTAGAACACTAATTG
CATCAATATCCCCAGGGGACTAAAAAGCAACTGGGAAACAGTTTCTTAGA
AAAGTTAGTATAGCTCTGCTTTCTGCATTTCTGTGTTGTGTTTTCTGCAA
TCTCTATAAATCAACTCATCCCATCTTTATTCCTATATCCGATGATTCCC
AAAGGCCACGTGACCTCAGTTTCAGTCACCAACATGGTAATCTCAGTCCA
TGAAGAGAACTTTAAGCATGGAGCCCAGTGGCAGTGGCTTGGCCTTTTCA
TGTGTGTCGTTAAAAGAGACATGAGAGTGCCCGTCCCTTAATCTTTTTCT
TGTGTCATCTCTCTGACAGCTGAACTGCTGTTCTCCACTCTGTTCTTTCA
TTATGAAGCATCCTATAACGCAAACCAGATCAACTCTGTGTCTCAACTCA
GGAATTTGTTATAAGAGGACGAGGCTGAATAGTATAGCACCTTGTGAGAA
TTTTTATTTACAAACCATTAGTACCGAGCAAGACTCCAGGACTTTCTGCT
TCTGAAAAAGTTTCCCTAATGGCCTTTTCCAGNTCGGCCTTTACCCAAAA
AACCCAAGAATTTGGGTCTTTCN
CGAGTTATANNNNAATCACGTGAGCCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTATCCCAGGCACTGTGAAT
ACATGGTGATGGATGTACCCTTGAAGGGAAGAATTGAAGACCCAAACAAA
TCCTGCAAAACAGTTCCTACTGGAAGCCAAGGACTCAAATTGTACAGATG
TTGTCTTTTTATAGAACCTTGCTGGGTCTTTTGTCTTGAATGAACTGAAA
GTGGGACCCTAGAAAGTAGACAGCCCAGGACTTATCCTGGATTCTTGATG
AGAAAGGCAGATTTCCTTGCTAAGCCCTAGCACTTGTTCCTTTGCATCTG
TTGCTGTGAGTGCTGGCCAGAGCTGTGGTTTCAGCCAATGCAGATGAGGA
GTAATAAACTTTGTTGCCCTTTGGCTACTGCTGAAAATGAACCCTATTTC
CCAGACTCTACAGGCTTGCACTCTCTGATTCTGAATAAATACTTCCTGAA
TAATTCAGGATTCTCTAGAGGATGTGGAGAAAGAGGAAAACTCCTCCATT
GCTGGTGGGATTGCAAGTTTGTACAACCACTCTGGAAATCAGTCTGGCGA
TTCTTCAGAAAACTGGACATAGTACTACCTGAAGATCCAGCAATACCTCT
CCTGGGCATATACCCAGAAGATGTTCCAACTGGTAATAAGGACACATGCT
CCACTATGTTCATAACAGCCCTATTTATAATAGACAGAAGCTGGAAAGAA
TCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGAGCATTTA
CACAATGGAGTACTATTCAGCTATTTAAAACAATGAATTTATGAAATTCT
TGGGCAAATGGATGTATCTGGAGGATATCATCCCTAGTGAGGTAACCCAA
TCACAAAAGAAGTCACTTAATATGCACTCACGGATAGATTAAGTGGATAT
AACCCCCAAAAACTTTAGGAAACCCCAAGAATACATTTTCCTTAAACCCC
AAGAAAAAATCCAGAAAGGTAATAACCAAAAGTGGGGGAACACCTTTTAT
TCCCTCCCCTTAAAAAAAAGGGGAAAACAAAAAATTCCTCCCGTGGAAAG
GGAGTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_f19.b1 MSMg01no122_f19.b1 CHROMAT_FILE:
MSMg01no122_f19.b1 PHD_FILE: MSMg01no122_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:44 2005
         (732 letters)



>mm_chr7_76351003_76352134
          Length = 1132

 Score = 1353 bits (700), Expect = 0.0
 Identities = 724/732 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtccaaaaccactgatggagaaggtttcatctcacttatcacctcattctcctgatggg 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 932 tgtccaaaaccactgatggagaaggttttatctcacttatcacctcattctcctgatggg 873

                                                                       
Query: 61  aaaaccaagactctaacaggtgagcaatgatggaagaaaagaacaataaccactaagcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 aaaaccaagactctaacaggtgagcaatgatggaagaaaagaacaataaccactaagcca 813

                                                                       
Query: 121 gacaggcctgtgatttcaactgaatttttgccctttataggaagtgtaagttctgacaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 gacaggcctgtgatttcaactgaatttttgccctttataggaagtgtaagttctgacaga 753

                                                                       
Query: 181 aacaattaagttctctcaccctccaccgactctacatgatgcattttaattggcttgttt 240
           |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 752 aacaattaagctctctcaccctccacagactctacatgatgcattttaattggcttgttt 693

                                                                       
Query: 241 ggcatttcttaaagtaaatcccgctgatacacttgtttcactggctgcttaaatgtgtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ggcatttcttaaagtaaatcccgctgatacacttgtttcactggctgcttaaatgtgtta 633

                                                                       
Query: 301 aatgaaaataaataaatttcagggtccaataagtcttgaaaatactggtttaaagtagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aatgaaaataaataaatttcagggtccaataagtcttgaaaatactggtttaaagtagag 573

                                                                       
Query: 361 ttaggccaatccctttacttccaaaccctcagagtctctagaacactaattgcatcaata 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 572 ttaggccaatccctttacttccaaatcctcagagtctctagaacactaattgcatcaata 513

                                                                       
Query: 421 tccccaggggactaaaaagcaactgggaaacagtttcttagaaaagttagtatagctctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tccccaggggactaaaaagcaactgggaaacagtttcttagaaaagttagtatagctctg 453

                                                                       
Query: 481 ctttctgcatttctgtgttgtgttttctgcaatctctataaatcaactcatcccatcttt 540
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ctttctgcatttccgtgttgtgttttctgcaatctctataaatcaactcatcccatcttt 393

                                                                       
Query: 541 attcctatatccgatgattcccaaaggccacgtgacctcagtttcagtcaccaacatggt 600
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 392 attcctatatccgatgattcccaaaggtcacgtgacctcagtttcagtcaccaacatggt 333

                                                                       
Query: 601 aatctcagtccatgaagagaactttaagcatggagcccagtggcagtggcttggcctttt 660
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 332 aatctcagtccatgaagagaactttaagcatggagcctagtggcagtggcttggcctttt 273

                                                                       
Query: 661 catgtgtgtcgttaaaagagacatgagagtgcccgtcccttaatctttttcttgtgtcat 720
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 catgtgtgtcgttgaaagagacatgagagtgcccgtcccttaatctttttcttgtgtcat 213

                       
Query: 721 ctctctgacagc 732
           ||||||||||||
Sbjct: 212 ctctctgacagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 732
Length of database: 1132
Length adjustment: 10
Effective length of query: 722
Effective length of database: 1122
Effective search space:   810084
Effective search space used:   810084
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)