Query= MSMg01no122_o21.b1 MSMg01no122_o21.b1 CHROMAT_FILE:
MSMg01no122_o21.b1 PHD_FILE: MSMg01no122_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:57 2005
(713 letters)
>mm_chr7_122810357_122811468
Length = 1112
Score = 1297 bits (671), Expect = 0.0
Identities = 688/697 (98%), Gaps = 7/697 (1%)
Strand = Plus / Minus
Query: 1 agtcactggaataaaggcccctca---ggggccttaaaaaaaacgtgtcaattttaaagg 57
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 693 agtcactggaataaaggcccctcaggggggg----aaaaaaaacgtgtcaattttaaagg 638
Query: 58 tctttcctaactgaagaccattttgtgatagagccaaaggttaataaaatcagtagtgaa 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tctttcctaactgaagaccattttgtgatagagccaaaggttaataaaatcagtagtgaa 578
Query: 118 tgtagcaattttacagataagctattcacaacaagtgtagttacttgaataaaaagctaa 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tgtagcaattttacagataagctattcacaacaagtgtagttacttgaataaaaagctaa 518
Query: 178 ttcagttctaaaatgccacatgcagtagcagtgaatagctgcttttaggtgctttccaga 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttcagttctaaaatgccacatgcagtagcagtgaatagctgcttttaggtgctttccaga 458
Query: 238 ggagggtaaagtacagaatcgcagcactcttctctcgccgcgtccccggccgcctgtaaa 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ggagggtaaagtacagaatcgcagcactcttctctcgccgcgtccccggccgcctgtaaa 398
Query: 298 tcgctgtgaatggtgctgtgggctgacaggctctattaagacaaactgcctttctcatcg 357
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tcgctgtgaatggggctgtgggctgacaggctctattaagacaaactgcctttctcatcg 338
Query: 358 gagagataaaataaatcaggtgtttagtcaaattaaaatacttcagctggagcaggcccc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gagagataaaataaatcaggtgtttagtcaaattaaaatacttcagctggagcaggcccc 278
Query: 418 ggggagcactgatccaccttactaatccgagagaaactcaagacagatgtggtttgggga 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ggggagcactgatccaccttactaatccgagagaaactcaagacagatgtggtttgggga 218
Query: 478 taaagatgaccccatggaagaaaaaaggaaagaaagaaaaaagaaaggaaaagccgagct 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 taaagatgaccccatggaagaaaaaaggaaagaaagaaaaaagaaaggaaaagccgagct 158
Query: 538 gcagctggcagctcggtctctgcagttggaggatagatacagtgttgcagttggaggata 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 gcagctggcagctcggtctctgcagttggaggatagatacagtgttgcagttggaggata 98
Query: 598 catacagcttaccgtggaggagcaagcgtcaggcacacacaccctgtgtgtgccacacag 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 gatacagcttaccgtggaggagcaagcgtcaggcacacacaccctgtgtgtgccacacag 38
Query: 658 gaaaggcaggcgcactgacttggagaaaagctgtgta 694
|||||||||||||||||||||||||||||||||||||
Sbjct: 37 gaaaggcaggcgcactgacttggagaaaagctgtgta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1112
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1102
Effective search space: 774706
Effective search space used: 774706
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_o21.g1 MSMg01no122_o21.g1 CHROMAT_FILE:
MSMg01no122_o21.g1 PHD_FILE: MSMg01no122_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:57 2005
(574 letters)
>mm_chr7_122665345_122666318
Length = 974
Score = 920 bits (476), Expect = 0.0
Identities = 557/602 (92%), Gaps = 33/602 (5%)
Strand = Plus / Plus
Query: 1 ctctacccccacctcagtctctgtctttctggaaaagcactcacacatacaaccttttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ctctacccccacctcagtctctgtctttctggaaaagcactcacacatacaaccttttat 237
Query: 61 ttaatcactataatcccatggcaccagcatttgcttacccattttatggattgggaagtg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 238 ttaatcactataatcccatggcaccagcatttgcttacccattttatggattgggaggtg 297
Query: 121 atacagtaatcatattttagagttatgaaatttatctcaccacagtttaatggttaaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 atacagtaatcatattttagagttatgaaatttatctcaccacagtttaatggttaaaaa 357
Query: 181 tataaagatattcttatgcctcaccatctgttttctaaagatagccataattgtaactga 240
|||||||||||||||||||||||||| ||||||||||| || ||||||| ||||||||||
Sbjct: 358 tataaagatattcttatgcctcacca-ctgttttctaaggacagccatagttgtaactga 416
Query: 241 gttcgatgaggctcttacagtcagcattactacttttttttt----aggtatactaagaa 296
||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct: 417 gttcgatgaggctcttacagtcagcattactacattat----gacaaggtatactaagaa 472
Query: 297 ggaatttggacacaagtgtataccgactgaagaaagaccatgtgagaacaagaagggcag 356
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 473 ggaatttggacacaagtgtatacagactgaagaaagaccgtgtgagaacaagaagggcag 532
Query: 357 atgtagaagccaaggacagaggcct------gggggggggggggg--------------- 395
||||||||||||||||||||||||| ||||||||||||||
Sbjct: 533 atgtagaagccaaggacagaggccttggggcggggggggggggggcggggggcggggggg 592
Query: 396 --gaa-acagccccactggcatcttgatctagaattttctaagattaaaaaaaaatctaa 452
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gggaagacagcctcactggcatcttgatctagaattttctaagattaaaaaaaaatctaa 652
Query: 453 gttgtctgagcaccccccccccaagtctgacgtagctgtgatagataacaaactgttaga 512
||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 653 gttgtctgagcccccccccccccagtctgaggtagctgtgatagataacaaactgttaga 712
Query: 513 atggcagcttttgcttcttatctcacaaaagctttcttgtcactgggcagtttatcacat 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 atggcagcttttgcttcttatctcacaaaagctttcttgtcactgggcagtttatcacat 772
Query: 573 aa 574
||
Sbjct: 773 aa 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
