BAC Information

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BAC

Clone NameMSMg01-123G17
Chromosome7 (Build37)
Map Location 115,429,484 - 115,429,821
singlet/doubletsinglet
Overlap geneOlfr490
Upstream geneSyt9, Olfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1
Downstream geneLOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1, Stk33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123G17.T7 (MSMg01no123_g17.b1)MSMg01-123G17.TJ (MSMg01no123_g17.g1)
ACCAG333026AG333027
length1,2621,315
length of high quality
(start - end)
338 (128 - 465)334 (125 - 458)
definitionCHROMAT_FILE: MSMg01no123_g17.b1 PHD_FILE: MSMg01no123_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:07 2005CHROMAT_FILE: MSMg01no123_g17.g1 PHD_FILE: MSMg01no123_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTTCTTNNNNGACCATTCGCGCTATCGACTCCTATGGGAGAGGATCCG
CGGAATTCTTTAAATATGAATATCCCTTTAATACTTTTGATGGTATTTTT
GTGTGAAAAAAATTCCTTTATACATGAAATTTACTAGGTACAACATATTA
TGAATATATTTTTTACCATATGATGTATGAATGCTCAGACTGTACATTTA
CTACCAAACTCAAAGCCTGGTTAAATTTGGATCATAACATGTATCGCCCC
ATCAATACCCATTTTACATTTAATACAATGTCTATGCAATATAATTACAG
TACAGCATGTGACAACATAATACATTTGAAGATATATCTAAGAGAATGTT
TTCCTATCAAAATGTCTTTTCAGGGCACCCTTAATCTCATTATTCCTAAG
GCTGTATTTTAGTGGGTTCAACATGGGAACCACAACCATGTAGAACACAG
AGATTATTTTGTTCTGCCCCCTTGAATAGCTGGACTTAGGCATCACATAA
ATGAATGTAACTGTTCCGTAAAATAAAGTGACTGCAGTTGTTGGGAGCCG
CACCCACATTCGCCGTCACAAGATGGCGCTGACATCTTGTGTTCTAAGTG
GTAAACAAATAATCTGCGCATGTGCCAAGGGTATTTTACAACTACATGTA
CTCTGCCTTAACTCGGCCATGGGCTGCAGCCAATCAGGGAGTGATGCGTC
CTAGGCAGAGAATAACTCTCCTAAATAGGGACGGCGGGTTTTCGCTTTCG
TTTATAAGGGGGCTTTCGTTTTTGGGGCTTGGGGTTTTGCGCTCCTGCTC
CTGAAGATGTTACCAATAAAGTTTTGCCGCAGAATATTCTGGTTTGTTGT
GTTCTTTCCTGGCCGGTCGCGTGAACGCCTGTAATATTTGGTGCCGAAAC
CCGGTACAAGAAAAATTCCTGTATTAAATATTCCTTAAAAACCTGGCACC
GGCACATAGAAAATCCCTTCTTTTGGGATCCATAACTGCGTTTCTCGTTT
ATAAGCCTTCCTCTTATTTTATAATGTTGTAAAAGTATTTTCCTGTCTGA
ATTTCTAAATTTTTCCTCTTGGGTAAACTAACTTCCCTGTGTAATTTCGC
TTTTCTAGGTTATTTCTGGTCTTTGTATTTTCTTTATTATATTTCTTTAA
ATTTTTTTATAATATATAGGGCTAAATTTCTTTCTTAGAGTAATTCTCAG
CCGCTCTAAACTTCTCCACTAGGCAATAAACCCTCTTTTTCCCTTCTATC
TATTTATATATC
TTTTTTCTCCAGTGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTTTTTTCACAAGAGTTAGTAGGGTAGTAA
AGGACTCTAGCCTTTAATTGTATAAGCACACAGTAATCTTTGGTGTCATC
AAATACCAATGTTGACACACAGGGTGTCAGGCCTGTACTAACAGGCCCAC
CATTTATGTAGACCAGGAAACAAGTACCTAATGTTAGAAGTCTTAGGGCT
CTTAAGAGTTTCATTACATAAATGTTTGTAGGCAGCTGGTGGGTTTCCCA
AGCAGGTCCCTGTACCTGTAACCTTAGTAAGAGTCAGCCTATGACTAGTT
CCCCAAACACAAGCTTCATGGCTGGTGGTGTTGTTAAACATTCCCGACAC
TGCAATTCCTTCATAACAAGGAGGTCCTGAAGTGAGGCAAAGCCAACAAG
ACTCAGTCATATTAGGATTGGTTTGGATTATCACACTGAAGGCTCCCTGT
ATAAGATTGTGCAGTCTTTGTCCTGTCTTTATAGGGATCAGGAAGGAGCC
ACCTGATATTCTGATAGAGATCAGACCAGTATGGGGCATTGTTGGCGTAT
GCCTGATTGGGTTAGGCTGTAACAGCTGGAGTGTCTTACTGGGAATGGGG
GTCCCTGTTCAGCTAATACCTTGTTGGGCCTCACTGGTTGAGCTGGGGGT
TTTCTATTTTTAGGCAAAAAAGAAGATGTGAGCCTACCCTACCTCTATGT
TGGTAAAACCCAATGCCCCAAGTCATGCCTTTTTGCCGTCAAGAAAAGTC
TGTCATTTTTCCTATTTCACTGAACTTGCACTTTTACATAGTCTAAATCT
ATTGTCGCGCATGGCTTGTCTTTATTTAATTCCATTACCATGTATTTGCC
ATGCCCCTGTCTTTGACTATAGTAAAAAATCCTGCTTTCTCCTTCCTTAC
ATGACGTACCTCCTTTTCCTCTCCCCTTCATTTGAAATAAAATCTCTTCC
TTCCTCCTGTTATAAAAAATCTTGGTTTTCCTTCCTAATTTGGGGCTCCT
TTTTCCCAAATTCTTGGCTTACTTTTTATATTCTTGTTATCTTTCAACCC
ATATTTTGTGTTCTTCTTCTTTTTTTTCCTATCCTTTCTTATTCTTTCTC
TTCACTATAGTCATATCTTTTCTCTAATATTTTTTCTTACTCTCTCTATT
ATCTACTACCTATCCTCCTCTACTTTTCTAATTGTGATTATCCTTCCTCA
TCCTGACTCTCTATTATCTGTTCTTATTCTCTTCCACTTACTACCTATAT
CTATCCAGATCTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_g17.b1 MSMg01no123_g17.b1 CHROMAT_FILE:
MSMg01no123_g17.b1 PHD_FILE: MSMg01no123_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:07 2005
         (338 letters)



>mm_chr7_115429284_115430021
          Length = 738

 Score =  607 bits (314), Expect = e-178
 Identities = 332/338 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatttactaggtacaacatattatgaatatattttttaccatatgatgtatgaatgctca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 aatttactaggtacaacatattatgaatatattttttaccatatgatgtacgaatgctca 260

                                                                       
Query: 61  gactgtacatttactaccaaactcaaagcctggttaaatttggatcataacatgtatcgc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 gactgtacatttactaccaaactcaaagcctggttaaatttggatcataacatgtatccc 320

                                                                       
Query: 121 cccatcaatacccattttacatttaatacaatgtctatgcaatataattacagtacagca 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 cccatcaatacccattttacatttaatacaatgtctatgcaatattattacagtacagca 380

                                                                       
Query: 181 tgtgacaacataatacatttgaagatatatctaagagaatgttttcctatcaaaatgtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgacaacataatacatttgaagatatatctaagagaatgttttcctatcaaaatgtct 440

                                                                       
Query: 241 tttcagggcacccttaatctcattattcctaaggctgtattttagtgggttcaacatggg 300
           |||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||
Sbjct: 441 tttcagggcacccttaatctcattattcctaaggctgtagataagtgggttcaacatggg 500

                                                 
Query: 301 aaccacaaccatgtagaacacagagattattttgttct 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaccacaaccatgtagaacacagagattattttgttct 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)