Query= MSMg01no123_m03.b1 MSMg01no123_m03.b1 CHROMAT_FILE:
MSMg01no123_m03.b1 PHD_FILE: MSMg01no123_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:55 2005
(334 letters)
>mm_chr7_146114730_146115463
Length = 734
Score = 509 bits (263), Expect = e-148
Identities = 293/309 (94%), Gaps = 12/309 (3%)
Strand = Plus / Minus
Query: 33 ttaggcagtcctgtctggcctggaatttgctatgtagagcaagttggccttgaactcaca 92
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 734 ttaggcagtcctggctggcctggaacttgctatgtagagcaagttggccttgaactcaca 675
Query: 93 ggcatcaccctgtctctgctcctctggagtgctgggattaaagacatggaccaccatacc 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ggcatcaccctgtctctgctcctctggagtgctgggattaaagacatggaccaccatacc 615
Query: 153 tggctaccctctgtatttttaagtatatgcaaccaaaatttactgc-g---gtttgtttg 208
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 614 tggctaccctctgtatttttaagtatatgcaaccaaaatttactgctgtttgtttgtttg 555
Query: 209 tttatttatttatttat--------gccaatgatccagtctacccgcagtgtttggccta 260
||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 554 tttatttatttatttatttatttttgccaatgatccagtctacccgcagtgtttggccta 495
Query: 261 ggcacacctactcaaactgtttttacacctccagaatggtacaccctacttctgtaaagt 320
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ggcacacctactcaaactgctgttacacctccagaatggtacaccctacttctgtaaagt 435
Query: 321 gtcaccttc 329
|||||||||
Sbjct: 434 gtcaccttc 426
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space: 235625
Effective search space used: 235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no123_m03.g1 MSMg01no123_m03.g1 CHROMAT_FILE:
MSMg01no123_m03.g1 PHD_FILE: MSMg01no123_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:55 2005
(616 letters)
>mm_chr7_145939432_145940447
Length = 1016
Score = 1114 bits (576), Expect = 0.0
Identities = 606/616 (98%)
Strand = Plus / Plus
Query: 1 gattgtatcacagcttggaggaccaaggttccagttccttggccagcatgaggactggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gattgtatcacagcttggaggaccaaggttccagttccttggccagcatgaggactggga 260
Query: 61 taataaggaagacttaagacaacataaggtattaaagaacccaacaaggactcttcctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taataaggaagacttaagacaacataaggtattaaagaacccaacaaggactcttcctgg 320
Query: 121 gtgacagctacctagtattctaggctgcactgtcacaaggcccctgagcagagcaaagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgacagctacctagtattctaggctgcactgtcacaaggcccctgagcagagcaaagca 380
Query: 181 atgaccctttgctagctggccacgtctttcttgccaggctctgcagctgcagagatagaa 240
||||||||||||||||||||||| ||||||| |||||| |||||||||| || |||||||
Sbjct: 381 atgaccctttgctagctggccacatctttctcgccagggtctgcagctgaagggatagaa 440
Query: 241 cccacccacctcacccagaatctcactctggcctacattacaagaccactgacctcccag 300
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 441 cccacccacctcacccagaatctcactctggcctatagcacaagaccactgacctcccag 500
Query: 301 agttgcttcctgtagctccaagaccagtgaaggtcttgttcagtggacggcatgtgacag 360
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 agttgcttcctatagctccaagaccagtgaagatcttgttcagtggacggcatgtgacag 560
Query: 361 tggagttgctgaaacagtggaggtcctgtgacagtggaggtcctgcaacagtggaagtcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggagttgctgaaacagtggaggtcctgtgacagtggaggtcctgcaacagtggaagtcc 620
Query: 421 cagggtaactggtgctctgcccgggtcattgactggcccagagcaaaattcaacaaagag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagggtaactggtgctctgcccgggtcattgactggcccagagcaaaattcaacaaagag 680
Query: 481 agcatatgcccaacctaaaaactttctggaggtgacacctcagtgattttcctcaggaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agcatatgcccaacctaaaaactttctggaggtgacacctcagtgattttcctcaggaca 740
Query: 541 aacctagtttagaattgctgttgaggtatcttcattcagccacttggattgttacaaggc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacctagtttagaattgctgttgaggtatcttcattcagccacttggattgttacaaggc 800
Query: 601 aaaatagaaaggaact 616
||||||||||||||||
Sbjct: 801 aaaatagaaaggaact 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
