BAC Information

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BAC

Clone NameMSMg01-124A05
Chromosome7 (Build37)
Map Location 62,084,349 - 62,085,063
singlet/doubletsinglet
Overlap genenone
Upstream geneMrps33p, LOC622146
Downstream geneLuzp2, LOC668796, Siglech, Tubgcp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124A05.T7 (MSMg01no124_a05.b1)MSMg01-124A05.TJ (MSMg01no124_a05.g1)
ACCAG333474AG333475
length1,2171,223
length of high quality
(start - end)
715 (91 - 805)719 (85 - 803)
definitionCHROMAT_FILE: MSMg01no124_a05.b1 PHD_FILE: MSMg01no124_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:31 2005CHROMAT_FILE: MSMg01no124_a05.g1 PHD_FILE: MSMg01no124_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTCTTTTATNAAACAATCGGCGCTNXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGTAATCTTCCTGCTTCCGTTTAAAAAGTGCTGGGATTAA
AAGCATGTGCCACCACTGCCCAACTTATATCTACTCTTAATATCCTTGAT
ATAAAATGTAATTTTCCTGACTCCATTAATTTCTCTTTTACCAATTTTCC
TGTTCAAATAACACCTGTGGGGTCAGCAAGGTGGCACAGCTACAAAGGCT
CTTGCTGTCAAGGTCAAGGGCCTAAATTATATACTCAGACCTACATGGTG
GAAGGAGAGAGGCAGACCCCAGCAAGTTGTCCTCTGTCTTAACGCTTGTG
TCATGACATGTGTACTCCTTTGTCCACATACAAAAAAGAATGTTAAAAAA
AAATAAATCCTATATTGAGGTCACCACTTCATCCTTGAAATGATACCACA
CTTTATCCATTCATTCATTAACGAGCAACTAAACTAATCTCACAGTGTAT
TTATTAATAATCATGGATATGCAAGTATCTCTGAAGTATGCTGACCAAGA
ACCACACATGCACACACATTTGAGTGATATAGCTGGGTAATATGATAGAT
TTGTTTTAATCTTCTTGACAAAGGTTTGCCCTAATTTCCAAAGTGGTTAT
ACTGATTTAGATGCTAAACAATAGTTAACAACATTAACTGGCATCCTCAC
CAGCATTGTTTGTTTTCTCAATGATCACAGGCCTGGCTGGAGTAAAATGG
AGTATCAGTGTGCATTGACATGGGTTTACTTCATGGATAACTCCTTTTAT
AGTATATTTGTTAGCCAACAATCCTTCTTATGAAAACTCCATGCTTAGCT
AATTGAACATTGGTGGATTATGTTTTCTTCTGACTTTTAATTTCTTGAAT
TGCTTTTGTATTTAATTCTGGGAATTTGACTCCTGTTGACTTGAGACTCA
TTATAACCAAATTTCCCTGTCTTGGTTAGTCATAACCCGATCATAAAGNG
CAACCGGAAAACATCCTCCCAATGCTTTGACATTAAAAATTATTTTGCGT
CCATTTAAAAAAAACCCTGTTAACCTCTATGGCGTTCACCACTGTGTTTT
CAATAATCAACTCTTTTGTTAAAGGAAAAGGTCCCCGTAAATTTCCTGGC
CCTAAAAATTTCTTTTCTCTAAAAAATCCCCTCGGTAATTGGTCTAAACC
CTTAGGGGAATAAATTT
CCTTTTTTTTTTATACATGTGAGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTCTTAACAGGCTTTTAGGTATTT
CCCGCAGTTTTATTTTCCCTAGTCATCTTTCTCCCTACTGTGTGCATCCC
ACAGCTCATGATCTGGCTTTCAGCTTCTTAGTGAGATTCTCCTACGTTTC
TTTTCCTCTCTATGCCACAGCAGTTGTAAAGCTTCAGTAGACACAGGTGG
AACATGGCTCTTCTGTGATCTCCTATCCTAGTTTTCTGGATTATAAATTG
TCACATTTTTTCTCAATTTTTTTAAATTTTATATAAGAAAATTTGGTATT
AATTATTCCTGTATGCCTAGAAGGATGTCTCATCATTAGTTTTCATCCAA
ATTAAAACTGAGTGTGATGAGAGGCTGTCTTTGACAAATTAAATGACCAG
TGTCACAGTTAGCAAGGCAGTGCTGTCTTCAAAGGACCCTTTTTTTTTTT
TTAAATCACAGCATTGGAAGTAAAGTAAGCTTAAGTTTTTAGTCTAAAAT
AACCACTAGGACAGAAAATATATTCTTGAAAAATAAAGCATGTACTTATT
CCCATGGAATGAGATATTACTGACTCATAAATGTAGGCACAATTTATTTA
AAAATGAATGGATTTCTTAATCAATATGTTAAAAATATGGCAGTATTTGA
AAATAACTACAGAAAGACTCAAAAACCCTGTTTCATAAGGACATTCATGT
AGAAAGGCATTTCTATACTCATCAAAAGATTTGCCCTATAAAGACCTCAT
TGCGAGTGATGAGCCCTGAAGGATTCTCTGTGTGACTGTTGCCCTAAAGC
AGTTTAAATTTACAGTGCAAGCCTTGCATTTGAACACAGGGTTTCCCATC
TTGCGAATGTAATGTTAAGATCTAAAAGTGGGTGTGTATCCCACGCTTAC
AATTTTAGCACTTGGATAGCCTGAAGCAAGAAGATTCCCGGGAATTAAGG
GTTAACCCGGCCCTACTTATTAAGGCCTTTATCTCTACCTTTCTCCCCCA
AACTAATTTAGTTAACAACCTTTAATTTGGGGCTGCCCGGGGCCATGAAC
CTTCTCTCCACAAAAAAAATTTCCCCCTCTGGCCCTTACTTTACAAAAGC
TCGGGGTACCCTCGGGAAAAATTGCCCGGGGTTCAAAAAAAAATATCTCC
TTTTGTCTAAAAATCTGTCCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_a05.g1 MSMg01no124_a05.g1 CHROMAT_FILE:
MSMg01no124_a05.g1 PHD_FILE: MSMg01no124_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:31 2005
         (719 letters)



>mm_chr7_62084149_62085267
          Length = 1119

 Score = 1193 bits (617), Expect = 0.0
 Identities = 693/719 (96%), Gaps = 5/719 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggcttttaggtatttcccgcagttttattttccctagtcatctttctccctactgtgtg 60
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 201 aggcttttaggtatttcccgcagttttattttctgtagtcatctttctccctactgtgtg 260

                                                                       
Query: 61  catcccacagctcatgatctggctttcagcttcttagtgagattctcctacgtttctttt 120
           ||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||
Sbjct: 261 catcccacagctcatgatctggctttcagcttcttggtgagattctcctatgttcctttt 320

                                                                       
Query: 121 cctctctatgccacagcagttgtaaagcttcagtagacacaggtggaacatggctcttct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 cctctctatgccacagcagttgtaaagcttcagtagacacaggtggaacacggctcttct 380

                                                                       
Query: 181 gtgatctcctatcctagttttctggattataaattgtcacatttttt-ctcaattttttt 239
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 381 gtgatctcctatcctagttttctggattataaattgtcacatttttttctcaattgtttt 440

                                                                       
Query: 240 aaattttatataagaaaatttggtattaattattcctgtatgcctagaaggatgtctcat 299
           |  |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 a--ttttgtataagaaaatttggtattaattattcctgtatgcctagaaggacgtctcat 498

                                                                       
Query: 300 cattagttttcatccaaattaaaactgagtgtgatgagaggctgtctttgacaaattaaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cattagttttcatccaaattaaaactgagtgtgatgagaggctgtctttgacaaattaaa 558

                                                                       
Query: 360 tgaccagtgtcacagttagcaaggcagtgctgtcttcaaaggacccttttttttttttta 419
           ||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| |
Sbjct: 559 tgaccagtgtcacagttagcagggcagtgttgtcttcaaaggacactttttttttttt-a 617

                                                                       
Query: 420 aatcacagcattggaagtaaagtaagcttaagtttttagtctaaaataaccactaggaca 479
           |||||||| |||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct: 618 aatcacagaattggaagtaaagtaagcttaagtttctattccaaaataaccactaggaca 677

                                                                       
Query: 480 gaaaatatattcttgaaaaataaagcatgtacttattcccatggaatgagatattactga 539
           |||||||| ||||| ||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 678 gaaaatatcttcttaaaaaataaagcatatacttattcccacggaatgagatattactga 737

                                                                       
Query: 540 ctcataaatgtaggcacaatttatttaaaaatgaatggatttcttaatcaatatgttaaa 599
           |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 738 ctcataaatgtaggcataatttatttaaaa-tgaatggatttcttaatcaatatgttaaa 796

                                                                       
Query: 600 aatatggcagtatttgaaaataactacagaaagactcaaaaaccctgtttcataaggaca 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 aatatggcagtatttgaaaataactacagaaagactcaaaaaccctgtttcataaggaca 856

                                                                      
Query: 660 ttcatgtagaaaggcatttctatactcatcaaaagatttgccctataaagacctcattg 718
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 ttcatgtagaaaggcatttctatactcatcaaaagatttgccctataaagacctcattg 915


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 1119
Length adjustment: 10
Effective length of query: 709
Effective length of database: 1109
Effective search space:   786281
Effective search space used:   786281
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)