BAC Information

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BAC

Clone NameMSMg01-124A12
Chromosome7 (Build37)
Map Location 63,082,837 - 63,083,202
singlet/doubletsinglet
Overlap geneTubgcp5
Upstream geneLuzp2, LOC668796, Siglech
Downstream geneCyfip1, Nipa2, Nipa1, LOC672959, Herc2, p, LOC100040839, Gabrg3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124A12.T7 (MSMg01no124_a12.b1)MSMg01-124A12.TJ (MSMg01no124_a12.g1)
ACCAG333488AG333489
length1,2511,281
length of high quality
(start - end)
423 (29 - 451)644 (125 - 768)
definitionCHROMAT_FILE: MSMg01no124_a12.b1 PHD_FILE: MSMg01no124_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:34 2005CHROMAT_FILE: MSMg01no124_a12.g1 PHD_FILE: MSMg01no124_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGGCATTGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCA
GGCTGTCAGCTTGCGCGATTAATGCCTTTGTGCGCTGAGTCACCTCCCCA
GCCGACACTATTGTTTTTAAGCCTTCCCTTAGGAACGCCCTCCCCGTCAC
AGAGCTCCAGTCTAGGCTCTGAATGGCAGCAGCACTGAGGTGCACTCCCC
CTCGTGATTAGCATGGACTAAATACCGACTGCTATAAATGCTGCGCAAGG
GTTGGAGAGGTGCTCAGTGGTTAAGAGTGTTTGTGTGCAGCCCTGAGGTC
TAGAGTTTGGATCCCAGCGTCTACGAATGACCTCTCATAGGCCTGCAGCC
ACAGTTTGAGGAGGGGGAGACAGCAGGCTTGCTGGGCTTTACCGCCTTCC
ACTCTGGCTGAGAAAAGTAAGTCCCAGGTTCAGGAAAGAGGCTGTCTCAT
ATTTTTCTGCGCAGGATAACAGAAAAGACACCCAGACACATCTCTGGGCT
CCATGTGCAAAGAGACATGCATCCTCACAAATTTGTGTGAATATACTCCT
CATACAAGCACACAAGAAAACCCTAAGCCACACGACATGAAGCTCCATTT
CAGCAAATTACCACTGCATATATTTTCTAAAGGAGACAGAGGCTAAGCAT
TGAACTATATATTCAAATTGACATAAGAAGATAGCCAGGCTGGTAGTGTC
GCCCAGTAAAGCATTTACCTAGCACACGTGAATAAGGTCCTGAGTTCAAA
CCCTAGCACCGACACAAACTCCATCTAACTATCACCACCAAAAAACTGGA
GATGTTCCTGTAGACTGGCTCTTTTCTGTTTATTGACTTTAATCACTTTG
CCCCTTCAAATGACCCATGTGAAAAAAATAACCTATTACATCATCTTTTT
GGAGCTTACAAACTTATAAATTTTGGAAAGTAACCCAGCATCGATCCCCT
TCTTTTACTTTAAAAGTTTTCACCACGTGTGAAGTGGTCAGGCCCTCCGG
CCCTAAATCGTTCCCTCTTTCCAAATTTTTTTGGTGCATTCTCCCCGCAC
GGGTCCGGGCTGCCCCTTTAAACTTCCCCATCCTTGGAGCGTGTGGACTT
TTAAAAATTTGGGACCCTGGTCCATAATCTCCAAAATGTTGGGCCTTATT
TTTTTCAACCTCTATTTAATTACAGGGATACCCGCCCGGTTATACCTGTC
TCTCCCCAAATGGGTCCATCTCATATTCCTCATTCAAATGCGTTTCTAAA
C
TCTTTTTTTAACAAGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACTCTTAAGCTTTTGCAGAAAACCCAGG
GTTAGTTCCCAACATCCCTATGGAGACTTACAACAGCTTGCTACTCCAGT
TCCATGGAACCCAATTTACTCTTCTGACCGCTGAGGACTCCTGCATGTAC
CTCATGTGCAAACCTACACTCAGAAACAGACATACACATAAAATAAAATA
AGTAACCAGGCAGTGGTGGGGCACGCCTTTAATCCCAGCACTTGGAAGGC
AGAGGCAGGCAGATTTTTGAGTTCAAGGCCAGCCTGATCTTCAGAGTGAG
TTCCAGGACAACCAGAGCTACACAGAGAAACCCTGTCTGGAAAAAAACAA
AACAAAACATAACAAAAAATAAATTAAATAAAATAAGTAAGTACATATTG
ATTTTTTTTTCTGGCATGGTATCACTTTGTTTCACTTGCATGTCCTAGAA
CTCATAATGTAGATCAGGATGGCCTCAGAGGAGATCTACCTGTCTCTGCC
TTCCAAGTGTTGGCTTAGAAAGCATACATCACCACACTAGCTTTTAGAAA
GAAGGAAAGAGAGAAAGAGAGGAAGAGAGGAGGAAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAC
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGG
AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA
GGAAGGAAGGAAGGAAGGAAGTTTTTTCATCTCTTCTCTCTTCTCTTTAC
CCTTTTCCTCCTCTCTTTTATATTATTTTTTTCTTCTCTTCTACTCATTC
CTCTCTATACTCTTTTCTCTCTTTTCCTTTTATCTTTTTTCTATTTTTCT
TCTTCTTATTTCCTTTCTTTCTACTTTCCTCCCTTACTCTTTCATTACCT
TTCTCAATTCACACTACCTCTCTTTCTTCCCAACTCATTCTATTTTCTAT
TTCCATCCTCCTATTATTTTACTTCTTTTTTTCTCTTTTCATTTTTTCCC
TCCTTTATCATTTCTATCTTTTCAATCCCTTTTTCTATCTACTCTTTCCT
TCTTATTCTTCATTTTTCTTTTTCTCTTATCTTTTCCCCCTTTTCTTTTT
GATATGTACTATTATTCCTTCTAATTTCTTTCTACACCTCATTTTTACCT
ATCTTTTATAATCTTTATGTAATTCTCGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_a12.b1 MSMg01no124_a12.b1 CHROMAT_FILE:
MSMg01no124_a12.b1 PHD_FILE: MSMg01no124_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:34 2005
         (423 letters)



>mm_chr7_63082784_63083605
          Length = 822

 Score =  601 bits (311), Expect = e-176
 Identities = 353/367 (96%), Gaps = 2/367 (0%)
 Strand = Plus / Minus

                                                                       
Query: 56  gctgagtcacctccccagccgacactattgtttttaagccttcccttaggaacgccctcc 115
           ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 419 gctgagtcacctccccagccgacactagtgtttttaggccttcccttaggaacgccctcc 360

                                                                       
Query: 116 ccgtcacagagctccagtctaggctctgaatggcagcagcactgaggtgcactccccctc 175
           ||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 359 ccgtcacagggctccagtctaggctctgaatggcagcagcactaaggtgcact-cccctc 301

                                                                       
Query: 176 gtgattagcatggactaaataccgactgctataaatgctgcgcaagggttggagaggtgc 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gtgattagcatggactaaataccgactgctataaatgctgcgcaagggttggagaggtgc 241

                                                                       
Query: 236 tcagtggttaagagtgtttgtgtgcagccctgaggtctagagtttggatcccagcgtcta 295
           |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 240 tcagtgcttaagagtgtttgtgtgcagccctgaggtctagagtttggaccccagcgtcta 181

                                                                       
Query: 296 cgaatgacctctcataggcctgcagccacagtttgaggagggggagacagcaggcttgct 355
           | |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 180 caaatggcctctcataggcctgcagccacagtttgaggaggaggagacagcaggcttgct 121

                                                                       
Query: 356 gggctttaccgccttccactctggctgagaaaagtaagtcccaggttcagg-aaagaggc 414
           ||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| |
Sbjct: 120 gggctttactgccttccactctggctgagaaaagtaagtcccaggctcagggaaagagtc 61

                  
Query: 415 tgtctca 421
           |||||||
Sbjct: 60  tgtctca 54


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 822
Length adjustment: 9
Effective length of query: 414
Effective length of database: 813
Effective search space:   336582
Effective search space used:   336582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)