BAC Information

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BAC

Clone NameMSMg01-124N03
Chromosome7 (Build37)
Map Location 103,106,609 - 103,106,881
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040132, LOC666823, Frda-ps
Downstream geneEG666836, Odz4, LOC670727, LOC666858, Nars2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124N03.T7 (MSMg01no124_n03.b1)MSMg01-124N03.TJ (MSMg01no124_n03.g1)
ACCAG334076AG334077
length1,2081,249
length of high quality
(start - end)
378 (74 - 451)273 (122 - 394)
definitionCHROMAT_FILE: MSMg01no124_n03.b1 PHD_FILE: MSMg01no124_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:26 2005CHROMAT_FILE: MSMg01no124_n03.g1 PHD_FILE: MSMg01no124_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCA
CCTGAGGAATACACCATTAAGGAGAAGCATCTGAAAAAATGTTCAGCATC
CTCACCCTTCAAAGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCA
CACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGG
CGAGGATATGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAG
GCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGAAAATTGG
ACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCA
GAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATATT
ATCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAA
CAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTAC
TCAGCTATTTAAAAATGAATTTATGAAATTCCTAGGCAAATGGATGGACC
TGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCACAT
GATATGTACTCACTGATAAGTGGGTATTAGCCCAGAAATTTAGAATACCC
TAGGTACAAGATACAATTTGTAAAACACATGAAACTCAAGAAGAACGAAG
ACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATTGGGAACAAAACACCC
TTGGAATGAGTTACTTAGACAAAGTCTAGAGCTAAGACGAAAGGATGGAC
CATCTAGAGACTGCCATACCCGGGGATCCATCCCGTAATCAGCCTCCAAA
CACTGACACCCTTGCATATACTAGCCAGATTTTGCTGATAGGACCCTGAA
ATAGCTATCTCTTGTGAGGCTATGCTGGGGCCTAAGCAAACCCGAAATTG
GATGCTCCCAGTCAGCTATTGGATGAATCCCAAGGCCCCCCATGGAGGAG
CTAGAAAAAATACCCAGGAGGGTAGGGGATCTGCTCTTCTTAGGTGGTAA
CAACATTAGAACTACCCTTCCCCCCCGGAACTTGGGGCCCTAGCTGCATT
TGTATCAAAAAAGGCCTTATTTTGCCCTTCCTGGAAAAAGAAGGCCCCCT
GTTCTTTGCAACCTATATTGCCTCCTTACTGGTGGAATCTCACGGTCAAA
AAGGGCAA
CTCCTGGCCATGCGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCACTCTAAGGAACCCCATGCCTGTGGGAGCCATGT
GGGNCCCCTTTAAAAGCTCGCTTCCCTGNAAGCTGGCTATTGACCTCTGT
GAGCTTTCTATGCTACAACAGACACCCAACCCCATGGACTCCTACAAAGA
AAAGACAATGGTCTGCTTATTCTGGCCCACGGCTTGGAACATGTACCTTC
CATTCCTGACAGTGGAGTCCTTTGCCTTTGGGCCTGTGGCGAGGGCAGCA
AGTCAAGGCAGGAGCACAAGGAGGATGTATACAGGTTAGCATCTCATGAC
TAGGAAGCAAAGGGAGACTGAAGGGACTAGCGCCGTCCTAGCCTGCTCTT
TGTCATATTCCCTGCTAGGCCCTGTCTTTTAAGTTTCGCAACCTCCTATT
TTTTTTCCCCCCCCCCAGCCTCCCAACATGTGGATAAAAAAAAGAGGTGT
GTGATTTGTGCTATTGCTATTCCCATTCAAAGATTGAGAAACTTCCACCC
TGAATCTTGTTTCATGTGTGGCTTTTCCAGAATCAGCCTCCATTCTAAAA
TAGGGTATGATCTATGTCTCTTGTTTCTTCTTTATCCTCTGGCTCTACCA
CCACCACCACCAAATAAACATGCTGTACATAAATGTCATGACCAAGGCAG
AATTTACCGAGGAGCCCACAAGACAGTGTTGAGAATTTACGTGACACGCC
CATCCTTCTCAAAGGGCTTTCTTGATGTTTCTTATCTCACTCCAGCAGAC
CTTGATTATGCTGTTTTCTCTGGAACTTACCCCTCCCCTGCCCCCCGAAA
ATACTCGTTTATGGAATCCTGACGCCCAGCCTAGCTCTGGCCTTTTTTTT
ACCAAATCAAAGCCCCGCCCTGTAATACGCCCGGCTAGTGTAACACCTTC
TAACTCCTTTGACCCTGGTTTTTCCCAAAGGCTTTTTCCAAATCCTGGGC
TTTGCCAACCTTCCCCAAACAAGGCAACCCCGTTCTAGCCCCCTTTGCTT
TTTTCCTGAATCCAATTTCTCTTTTTGAAATTAAACCTATCAACCCCCTT
TTGCCCTTAATCATTTTTTGGAAATACGGACTTCCATCCTAGATTTCAGC
TCCTGTGACACTCTGTCCCCTTTTCCATCCCAAAAAACTCTCCTTTCGGA
TAATGATCCACCGACAACTGTATCCTCTACACAAGCCTCTCTATAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_n03.g1 MSMg01no124_n03.g1 CHROMAT_FILE:
MSMg01no124_n03.g1 PHD_FILE: MSMg01no124_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:26 2005
         (273 letters)



>mm_chr7_103106409_103107081
          Length = 673

 Score =  484 bits (250), Expect = e-141
 Identities = 267/273 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccctgnaagctggctattgacctctgtgagctttctatgctacaacagacacccaacc 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 201 ttccctgcaagctggctattgacctctgtgagctttctatgctacaacagacacccaaga 260

                                                                       
Query: 61  ccatggactcctacaaagaaaagacaatggtctgcttattctggcccacggcttggaaca 120
            ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatggactcataaaaagaaaagacaatggtctgcttattctggcccacggcttggaaca 320

                                                                       
Query: 121 tgtaccttccattcctgacagtggagtcctttgcctttgggcctgtggcgagggcagcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtaccttccattcctgacagtggagtcctttgcctttgggcctgtggcgagggcagcaa 380

                                                                       
Query: 181 gtcaaggcaggagcacaaggaggatgtatacaggttagcatctcatgactaggaagcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcaaggcaggagcacaaggaggatgtatacaggttagcatctcatgactaggaagcaaa 440

                                            
Query: 241 gggagactgaagggactagcgccgtcctagcct 273
           |||||||||||||||||||||||||||||||||
Sbjct: 441 gggagactgaagggactagcgccgtcctagcct 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)