BAC Information

Click to search

BAC

Clone NameMSMg01-125A12
Chromosome7 (Build37)
Map Location 94,803,089 - 94,803,733
singlet/doubletsinglet
Overlap geneGrm5
Upstream geneOlfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4, Tyr
Downstream geneCtsc, LOC100039756, Rab38, LOC100039924, LOC666598
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125A12.T7 (MSMg01no125_a12.b1)MSMg01-125A12.TJ (MSMg01no125_a12.g1)
ACCAG334230AG334231
length714725
length of high quality
(start - end)
590 (69 - 658)649 (77 - 725)
definitionCHROMAT_FILE: MSMg01no125_a12.b1 PHD_FILE: MSMg01no125_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:56 2005CHROMAT_FILE: MSMg01no125_a12.g1 PHD_FILE: MSMg01no125_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGCATCCGCGGAAT
TCTCAAATGAGGACAGTCTAATGGCCAAGAAACAAAGAAATGTTTAGCAT
CCTTTACCATCAGAGACATGTGAACCAAAATGACTCTGAAATTCTATCTT
ACACTTATCAGAATTCACACTGGCAAGAATATGGAGCAAGGGGAGAACTC
TTCCACTAACAGGAGTGCAAACGTGTACAGCCACTTTGGAAGTCAATGTG
ACAGTTCATCAGAAAATTGGAAATCCATCTACTGACTGAGTTATATAATT
TTTGGGCATATACTTAAAGGACACTCCATCCTATCACAAGAACACTTGCT
CAATTATTTTCTTAGAAGCTTTATTTATAATACACAATCTGGAAACAACC
TAGATGTCCCTCAACTAAAGAATGGATAAAAAAATTGGGACATTTACACA
ATAAGAAATCATCCTAAGTGAGGTAACACAGTCCCAGAAATATAAACATA
GTATCTACTTGCTTAAAAAAGGATTTTAGTGATAGAGTAAAAGATAAACA
TGCTGCAATCTATAGACCCAAAGGGGCTAAGTAAGAAGGAGGGCTTAAAA
GGAAGGGGGAAAGGATATACACTGGCATGGGAAAATAGAATGGATTTTGA
GGGTGTACTGTGAGGCAGGTGGGATTGAAAACAAAAGGGATCAGGTGAAG
GGAGGGAGGGATTA
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCCATGGTCAGCTCAAGGAC
TACCTAGGGTATTGATGAAGGTCAGGAAGCAAAGTTCAATTTTGCTTAGG
TATTTGGCAAGTCATTATTTGGAGGCACCTATAACAAAACAATACTGAAA
GGAAGCACACAGATCCATTCGCAAGGAAAAAATTGGAGCATAAGTACTAT
GGGATGCTACAGTTCCAGGAGACTAAGTTTCCATGAAACTCTTCACCTCA
GGACTGCTTCCAGGTTTCTAAACCTGTCAAGCAAGTCACTACTAAAGTGA
ATGTGGCACTCTTAAACTGTGTTATAGAGGATCCTTCTTCCCCGTTCATA
TATTTTAATCATGCCATTTGGTGTGGAGCAGTCTGTGGAGATTTCTGTCT
TCTAAATTTATTTTTAAAGCCCACATACTTTTAATTTGCCCATAAAAATG
TTCAAATTATGTTTAACACAGATTTCCCCTTTCATCTATTTTTTTTAATA
TATGTGTCATTGCTACCAAGGTATTTGTAAGTTTTTGCTTACATGTAGCA
TCATGATGTGGTTAACAACTAGGAAAGAGAATTGAAATAGCAAACAAAAG
CTATGTTCAACTATCTATTCCTTTCCATACAACTTATTTTATTTTTCTAT
TTTACTTAGTAATATGCTACAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_a12.g1 MSMg01no125_a12.g1 CHROMAT_FILE:
MSMg01no125_a12.g1 PHD_FILE: MSMg01no125_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:56 2005
         (649 letters)



>mm_chr7_94802885_94803933
          Length = 1049

 Score = 1098 bits (568), Expect = 0.0
 Identities = 628/650 (96%), Gaps = 6/650 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagcccatggtcagctcaaggactacctagggtattgatgaaggtcaggaagcaaagtt 60
           ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
Sbjct: 205 caagcccatggtcagctcaaggactacctagagtattgatgaaggccaggaagcaaagat 264

                                                                       
Query: 61  caattttgcttaggtatttggcaagtcattatttggaggcacctataacaaaacaatact 120
           | ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgatttcacttaggtatttggcaagtcattatttggaggcacctataacaaaacaatact 324

                                                                       
Query: 121 gaaaggaagcacacagatccattcgcaaggaaaaaattggagcataagtactatgggatg 180
           ||    ||||||| ||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct: 325 ga----aagcacatagatccattcgcaaggataaaattggagcatacgtgctatgggatg 380

                                                                       
Query: 181 ctacagttccaggagactaagtttccatgaaactcttcacctcaggactgcttccaggtt 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacagttccaggagactaagtttccatgaaactcttcacctcaggactgcttccaggtt 440

                                                                       
Query: 241 tctaaacctgtcaagcaagtcactactaaagtgaatgtggcactcttaaactgtgttata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctaaacctgtcaagcaagtcactactaaagtgaatgtggcactcttaaactgtgttata 500

                                                                       
Query: 301 gaggatccttcttccccgttcatatattttaatcatgccatttggtgtggagcagtctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaggatccttcttccccgttcatatattttaatcatgccatttggtgtggagcagtctgt 560

                                                                       
Query: 361 ggagatttctgtcttctaaatttatttttaaagcccacatacttttaatttgcccataaa 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggagatttttgtcttctaaatttatttttaaagcccacatacttttaatttgcccataaa 620

                                                                       
Query: 421 aatgttcaaattatgtttaacacagatttcccctttcatctattttttttaatatatgtg 480
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatgttcaaattatgtttaacgcagatttcccctttcatctattttttttaatatatgtg 680

                                                                       
Query: 481 tcattgctacca-aggtatttgtaagtttttgcttacatgtagcatcatgatgtggttaa 539
           |||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 tcattgctac-agaggtatttgtaactttttgcttacatgtagcatcatgatgtggttaa 739

                                                                       
Query: 540 caactaggaaagagaattgaaatagcaaacaaaagctatgttcaactatctattcctttc 599
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 740 caactaggaaagagaattgaaatagcaaacaaaagctatgttcaactagctattcctttc 799

                                                             
Query: 600 catacaacttattttatttttctattttacttagtaatatgctacaaaaa 649
           ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 800 catacaacttattttatttttgtattttacttagtaatatgctacaaaaa 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)