BAC Information

Click to search

BAC

Clone NameMSMg01-125B09
Chromosome7 (Build37)
Map Location 67,980,118 - 67,980,453
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664788, Snrpn, Snurf, EG664849, LOC100041201, LOC100041211, LOC664896
Downstream geneLOC100041229, LOC625287, D0Kist2, LOC100041248, LOC100041259, EG664943, B230209E15Rik, EG620934
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125B09.T7 (MSMg01no125_b09.b1)MSMg01-125B09.TJ (MSMg01no125_b09.g1)
ACCAG334271AG334272
length722717
length of high quality
(start - end)
444 (70 - 513)578 (72 - 649)
definitionCHROMAT_FILE: MSMg01no125_b09.b1 PHD_FILE: MSMg01no125_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:00 2005CHROMAT_FILE: MSMg01no125_b09.g1 PHD_FILE: MSMg01no125_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCGGA
ATTCCCACAAGCCTCCCTTCCATTACTTACTAGCCATATCATCTCCATAC
CTGAGTGCTTCAAATCAGCCATTCCTAGGTATCTCAGTCTTGGAAATTGT
CCAAGGCTTCCTGTACTTCCTTAGCCTTTAATATATAACTGTATATCTAT
AACTTTTGTATTTTATAAAATGGTCATGAAATGTTTGAAAGGGCACATTA
TGGTAAGGTAGGAGGAGTGCCTCAGTGGGCCCATGTTGAGGCATCACTAC
CTCCTGAGGTACCAGCCATACAGCTGGTATAATGTTGAATATAATTTATT
TGGGGACATGAGAAAGGAAGAGGAGTTGAGAAGGAAGTACAGGCAGAGAA
AGACATACACACACACATACACACACACACATACACACACACACATACAC
ACACACACACACAAAAAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGACAGAGAGACAGACAGACAGACACAGACAGAGAGACAG
AATGACAGAGAGGAGGGGAGGCCAGCCATGGACAGGTGGAGAGAGAGGGG
GATAGGGAAGCAGAGAGATGGAAAAATGAGCCATATAGACAATATAGCCA
TAGAGAGTGCCTAAGGCAGATCGAACACGCCCCACACCCCCCCCTTTCAT
ATATGTCTGGCCCTCCTTATTA
AATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAGCGCTGATAA
ACACCTGAAAAAAAAAAGTTCAGTATCCTTAATCATCAGTGAAATGCAAA
TCAAAACAACCCTGAGACTTTATCTCACACCAGTCAAAATGGGTAAGATC
AAAAATTCAGGTGACAGCAGATACTGGCTAGAATGTGGAGAAAGAGAAAC
ACTCCTCCATTGTTGTTGGGATGGCAAGCTTGTACAAACACTCTGGAAAT
CAATCTTGCAGTTCCTCAGAAAATTGGACATGGTACTACTGGAGGATCCC
ACAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTAGTAAGAA
AAAAACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCAAGATGCCCCTCAACAGAAGAATGGATACAAAAAATG
TGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGGCAAATGGTTGGACCTGGAGGGCATTGTCCTGATTG
AGGTAACCCAATCATAAAAGAACTCAAATGATATATACTCACTGATATGT
GGACATTAGCCCAGAAACTTAGAATACCCAAGATATAAGTTACAATTTGC
AAAACACATGAAACTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_b09.b1 MSMg01no125_b09.b1 CHROMAT_FILE:
MSMg01no125_b09.b1 PHD_FILE: MSMg01no125_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:00 2005
         (444 letters)



>mm_chr7_67980118_67980961
          Length = 844

 Score =  619 bits (320), Expect = 0.0
 Identities = 332/336 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccattacttactagccatatcatctccatacctgagtgcttcaaatcagccattcctagg 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 336 ccattacttactagccatatcatctccatacccgagtgcttcaaatcagccattcctagg 277

                                                                       
Query: 61  tatctcagtcttggaaattgtccaaggcttcctgtacttccttagcctttaatatataac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tatctcagtcttggaaattgtccaaggcttcctgtacttccttagcctttaatatataac 217

                                                                       
Query: 121 tgtatatctataacttttgtattttataaaatggtcatgaaatgtttgaaagggcacatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 216 tgtatatctataacttttgtattttataaaatggtcatgaaatgtttgacagggcacatt 157

                                                                       
Query: 181 atggtaaggtaggaggagtgcctcagtgggcccatgttgaggcatcactacctcctgagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 atggtaaggtaggaggagtgcctcagtgggcccatgttgaggcatcactacctcctgagg 97

                                                                       
Query: 241 taccagccatacagctggtataatgttgaatataatttatttggggacatgagaaaggaa 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 96  taccagccatacagctggtataatattgaatataatttatttggggacatgagaagggaa 37

                                               
Query: 301 gaggagttgagaaggaagtacaggcagagaaagaca 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 36  gaggagttgagaaggaagtacaggcagagaaagaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)