BAC Information

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BAC

Clone NameMSMg01-125H01
Chromosome7 (Build37)
Map Location 83,781,180 - 83,781,709
singlet/doubletsinglet
Overlap geneEG244071
Upstream geneAkap13, Klhl25, LOC100042210, LOC434200
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125H01.T7 (MSMg01no125_h01.b1)MSMg01-125H01.TJ (MSMg01no125_h01.g1)
ACCAG334532AG334533
length706699
length of high quality
(start - end)
629 (51 - 679)530 (76 - 605)
definitionCHROMAT_FILE: MSMg01no125_h01.b1 PHD_FILE: MSMg01no125_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:29 2005CHROMAT_FILE: MSMg01no125_h01.g1 PHD_FILE: MSMg01no125_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC
GCGGAATTCTTTGTTTATCCCTGAGCCCCATTTTTTAATGGGGTTATTTG
ATTTTCTGGAGTCTACCTTCTTGAGTTCTTTATATATATTGGATATTAGT
CCACTATCTGATTTAGGATAGGTAAAGATCCTTTGCCAATCTGTTGGTGG
CCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTT
TCATTAGGTCCCATTTGTCAATTCTCCATCTTACAGCACAAGCCATTGCT
GTTCTAAACAGGAATTTTTCCCCTGTGCCCATCTTTTCGAGGCTATTCCC
CACTTTCTCCTCTATAAGTTTCACTGTCTCTGGTTTTATGTGAAGTTCCT
TGATCCACTTAGATTTTGCCTTAGTACAAGGAGATAGGAATGGGTCAATT
CCCATTCTTCTACATGATAACCACCAGTTGTACCAGCATCATTTGTTGAA
AATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAAATCA
AGTGACCACAGGTGTGTGAGTTCATTTCTGGGTCTTCAATTCGATTCCAT
TGGTCTACTTGTCTGTCACTATACCAGTACCAGGCAGTTTTTTATCACAA
TTGCTCTGTAGTACAGCTTTAGGTCAGGCATTGTGATTCCACCAGAGGTC
CTTTTA
CCTCGATGATAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACATCACATTTATTCAGTTGAGGAA
CATATAAGGAAAGCCTTCTCATCAATTTCATCCATGTTATTTTGTGTTTC
CTCTTCAATTGAAAAAATTTTGGCCAAGTTAAGCATGGTATCATCAAAAT
TTAGTCTTTGACTCATTCAGTGTTTAAAGAGCCCAGCCAGTCATTAAAAC
TTTCCCCGAGGATTATGTGATGCTGGCTCAGTCGGGATGGAAATATCCAG
AGCAGTTAAGAGGAATCTCTGATCAATGTGACATGAAGACAGAGGAGACT
TTAAAGAGATAGTAGTTTATTCTTCACGTTGGCGTGCATCCCTGGGAGCC
AGGTCTCACATTTGGGTCAAGATGCTCAGATTAGAGTAAGTTTAGAGGAT
TGCAGGTTGATTAAAAGGTTTCAACGAGGAAACTAATTAAGCATGCCTCT
AGAACAAATAAAATGTACTTCACGGTGGCTTGACATTTCACTTCAGCGAG
AGAATTGTTGCATATCTATTATATGCATGTGTTTTTATATACATCAGTTT
TTAGCAGATTGATTTTATAAAGTAGAGAAAAAAATCTATAAATGTTTCCT
GCTTAGATTGTAGAACCTCTGCCTTTTTGCTGACTTAGGCGGTATGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_h01.g1 MSMg01no125_h01.g1 CHROMAT_FILE:
MSMg01no125_h01.g1 PHD_FILE: MSMg01no125_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:29 2005
         (530 letters)



>mm_chr7_83780980_83781909
          Length = 930

 Score = 1009 bits (522), Expect = 0.0
 Identities = 528/530 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatcacatttattcagttgaggaacatataaggaaagccttctcatcaatttcatccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatcacatttattcagttgaggaacatataaggaaagccttctcatcaatttcatccat 260

                                                                       
Query: 61  gttattttgtgtttcctcttcaattgaaaaaattttggccaagttaagcatggtatcatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttattttgtgtttcctcttcaattgaaaaaattttggccaagttaagcatggtatcatc 320

                                                                       
Query: 121 aaaatttagtctttgactcattcagtgtttaaagagcccagccagtcattaaaactttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaatttagtctttgactcattcagtgtttaaagagcccagccagtcattaaaactttcc 380

                                                                       
Query: 181 ccgaggattatgtgatgctggctcagtcgggatggaaatatccagagcagttaagaggaa 240
           | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 ctgaggattatgtgatgctggctcagtcgggatgaaaatatccagagcagttaagaggaa 440

                                                                       
Query: 241 tctctgatcaatgtgacatgaagacagaggagactttaaagagatagtagtttattcttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctctgatcaatgtgacatgaagacagaggagactttaaagagatagtagtttattcttc 500

                                                                       
Query: 301 acgttggcgtgcatccctgggagccaggtctcacatttgggtcaagatgctcagattaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acgttggcgtgcatccctgggagccaggtctcacatttgggtcaagatgctcagattaga 560

                                                                       
Query: 361 gtaagtttagaggattgcaggttgattaaaaggtttcaacgaggaaactaattaagcatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaagtttagaggattgcaggttgattaaaaggtttcaacgaggaaactaattaagcatg 620

                                                                       
Query: 421 cctctagaacaaataaaatgtacttcacggtggcttgacatttcacttcagcgagagaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctctagaacaaataaaatgtacttcacggtggcttgacatttcacttcagcgagagaat 680

                                                             
Query: 481 tgttgcatatctattatatgcatgtgtttttatatacatcagtttttagc 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgttgcatatctattatatgcatgtgtttttatatacatcagtttttagc 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)