Query= MSMg01no125_h24.b1 MSMg01no125_h24.b1 CHROMAT_FILE:
MSMg01no125_h24.b1 PHD_FILE: MSMg01no125_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:33 2005
(487 letters)
>mm_chr7_122513328_122514214
Length = 887
Score = 832 bits (430), Expect = 0.0
Identities = 475/494 (96%), Gaps = 7/494 (1%)
Strand = Plus / Minus
Query: 1 tcttcttcatgataaaagaaacatttaaacatacagttctcgcagaaggctatgctttct 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 651 tcttcttcatgataaaagaaacatttaaacctacagttctcgcagaaggctatgctttct 592
Query: 61 tatccttttccttcattgttgtatggctttggggatatccccctgtagtggtgttctcta 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 591 tatccttttccttcattgttgtatggctttggagatatccccctgtagtggtgttctcta 532
Query: 121 gctccactcagagagttccacatgtgtgcactgcagcatgctgggagaactgggatacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gctccactcagagagttccacatgtgtgcactgcagcatgctgggagaactgggatacct 472
Query: 181 tgatgataaaaatcaatttgctcttgtcttcatgtcctcacagctgcgggttctagtccc 240
||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 471 tgatgataaaaatcaatatgctcttgtcttcatgtcctcgcagctgtgggttctagtccc 412
Query: 241 acagtgagtcttagctccttgggtagaaaatacttctactttacagatggaaaaactaag 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 411 acagtgagtcttagctccttgggtaaaaaatacttctactttacagatggaaaaactaag 352
Query: 301 gacaggagtagagagttagctgctgaagtcctatcaaggccagcaatactaagtcagact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 351 gacaggagtagagagttagctgctgaagtcctatcaaggccagcaatactaagtccgact 292
Query: 361 ctcagtgagagcctggccatcaggcttgagggcccctctgcagctgcttcgttctgggtc 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ctcggtgagagcctggccatcaggcttgagggcccctctgcagctgcttcgttctgggtc 232
Query: 421 tggttggctctgaaggcaagcacatcccccct-------ttgcttgccgcttcctacact 473
||| ||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 231 tgggtggctctgagggcaagcacatccccccccccccccttgcttgccgcttcctacact 172
Query: 474 tgatcttagccaaa 487
|| |||||||||||
Sbjct: 171 tgctcttagccaaa 158
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no125_h24.g1 MSMg01no125_h24.g1 CHROMAT_FILE:
MSMg01no125_h24.g1 PHD_FILE: MSMg01no125_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:33 2005
(482 letters)
>mm_chr7_122375855_122376736
Length = 882
Score = 804 bits (416), Expect = 0.0
Identities = 452/464 (97%)
Strand = Plus / Plus
Query: 19 gaattctctcaacacaccatcatggttgttagcatgatttagggaggtctgacaggcacc 78
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 219 gaattctctcaacacaccaccatggttgttagggtgatttagggaggtctgacaggcacc 278
Query: 79 catgtatcccccaatattttattttacacccacccctcctgggttctagagcctcagatc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 catgtatcccccaatattttattttacacccacccctcctgggttctagagcctcagatc 338
Query: 139 ctgtcttcagacattctcctgagaatccaggtggctatctggacctggcaggctctacct 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ctgtcttcagacattctcctgagaatccaggtggctatctggacctggcaggctctacct 398
Query: 199 tttcttctggacatgacagtgatcagatgcaatgacagtcactggttttattgaagtgtt 258
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tttcttctggacatgacaatgatcagatgcaatgacagtcactggttttattgaagtgtt 458
Query: 259 gcaaggtgactacgtatgaaatactgatttccagggctgaagagatggctcagctggtaa 318
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gcaaggtgactacatatgaaatactgatttccagggctgaagagatggctcagctggtaa 518
Query: 319 gtgcttgcccttcaagcccaagaacatgagttcaatccttacagccagtagagaatagcc 378
|||||||||||||||||| |||| ||||||||||||||| |||||||| |||||||||||
Sbjct: 519 gtgcttgcccttcaagccgaagagcatgagttcaatcctcacagccagcagagaatagcc 578
Query: 379 aggagtggtgactgtgcataatccaagctctggaggggtggagtcggacagaagctcaag 438
|||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 579 aggagtggtgactgtgtataatccaagctctggaggggtggagacagacagaagctcaag 638
Query: 439 cctcactggtcaggcagattaaactactgtgtcatctccaagtc 482
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 cctcactggtcaggcagattaaactactgtgtcatctccaagtc 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
