BAC Information

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BAC

Clone NameMSMg01-126C24
Chromosome7 (Build37)
Map Location 76,544,543 - 76,545,108
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041800, EG384639, Arrdc4, LOC384741
Downstream geneEG665410, Nr2f2, LOC100042833
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126C24.T7 (MSMg01no126_c24.b1)MSMg01-126C24.TJ (MSMg01no126_c24.g1)
ACCAG335073AG335074
length712722
length of high quality
(start - end)
573 (38 - 610)189 (75 - 263)
definitionCHROMAT_FILE: MSMg01no126_c24.b1 PHD_FILE: MSMg01no126_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:28 2005CHROMAT_FILE: MSMg01no126_c24.g1 PHD_FILE: MSMg01no126_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTGCGGCGCTATACGACTCCTATTTTCAGAAATCCGCGGAATTCACT
CTGTTTGTCTTCCTGCTTAAGTAGTGTCCAAACATCTTGGCTAGAGGTTG
CTCCATGCTATGCATTCATATCTGCATTGCAACATCATCTTCAAGTGTTG
GGTAAGCAAGATGGTAAGTCCTATACTCCAAATAGTTAACAAGGAAACTC
TATGCTAATCATAATTACAACAAGTATACAAGGAGACACTGGAAGTAATT
TTCAGCAAAGAAATTGCACGTCTTTTGTGGATGATAAAATTTTATAGGAA
CGTTGAGATTTTTTTAAAGTCTGGAAAATAAATATAAATTAAAGAAAGAG
TAAAGGTACAGTAACTATTTTTCCTTGTGTTTTCTTGGAAGTATAATACA
GTGAACCAACAAATACAAAATATTATCTCAATTTTAATCATACAGCAGTA
CACAATACATTTATATTAAGCTAAGGATCAACAGATGATCCACACAATAA
CAATAAAATATTCTTGAAATTACAAACATAAAATTCTTTTATAAATTTTT
AAATTAATTTACTCTGTGTGCATGTGTTTGTCTGTATATATAAGCATGCA
TGCTATTGCGTGCGTGCCCGTGCGTGCGTGTGCGTCCCGTACCCTCTCTC
TTTTTCCATCCTTACTTGGCTTTTTCTCCTTTTCGTTCCCTTTTCCTTTT
CCCCTTTCCCTT
NTTCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGACACTTGAACAATAATACAAATGCT
CTTGGACATTCTCTGTGCGTCAGCTGCAAGCCTAGCCTTGGGCTAGCTCT
CCTGCATGCACCCCCCACACCCCCCCACACCCCCCCAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGCTACTTTTTTTCTCCCTCTTATGCTTTTCCTCCT
CCACTCCCTTTGTTATTCCTTTTTTTTTTTTCTTGTGCCCCCCCTCTCTA
TCCCCCCTCTTTTCTCGATTCTCGCCCCCTACTTTTTCCTTTCCTCTCTT
CTTTCTCCTCCTTCCTGTGTGTCCGTTTGCTGTCCTCCCTATCTTTTATC
CCCGCTCGCTCCTTTCCGTCTTGTTTTTCCCGTTGCCCCTTCTTTTACCC
TCTTCTTCTCCGTTTCCGTTGTCCCCCCCTTTCCCCTTCGTTCTCTGTTA
TCCTTTGTGCCTCTTTGCATTTGTAGCCCCCCCCCCAGGTTTTATGTGCT
TTCTTTTCCCTTTTTTGGCCTTTGTTCTCCCTTTTTTTTTCCTTCTGCCT
CTTTTTTCTTCTTAGTCTTTCTTTCCTCGCCTCGCCTGTCTCCTTTCTTC
CTCCTATCCTCCTCCCCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_c24.b1 MSMg01no126_c24.b1 CHROMAT_FILE:
MSMg01no126_c24.b1 PHD_FILE: MSMg01no126_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:28 2005
         (573 letters)



>mm_chr7_76544421_76545391
          Length = 971

 Score =  946 bits (489), Expect = 0.0
 Identities = 548/569 (96%), Gaps = 5/569 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactctgtttgtcttcctgcttaagtagtgtccaaacatcttggctagaggttgc 64
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gaattcactctgtttgtgatcctgcttaagtagtgtccaaacatcttggctagaggttgc 629

                                                                       
Query: 65  tccatgctatgcattcatatctgcattgcaacatcatcttcaagtgttgggtaagcaaga 124
           |||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 628 tccatgctctgctttcatatctgcattgcaacatcatcttcaagtgttgggtaagaaaga 569

                                                                       
Query: 125 tggtaagtcctatactccaaatagttaacaaggaaactctatgctaatcataattacaac 184
           ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||   ||
Sbjct: 568 tggtaagtcttatactccaaatacttaacaaggaaactctatgctaatcataatt---ac 512

                                                                       
Query: 185 aagtatacaaggagacactggaagtaattttcagcaaagaaattgcacgtcttttgtgga 244
           |||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 511 aagtgtacaaggagacactggaagtaattttcagcaaagaaattgtacttcttttgtgga 452

                                                                       
Query: 245 tgataaaa-ttttataggaacgttgagatttttttaaagtctggaaaataaatataaatt 303
           |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 451 tgataaaatttttataggaacgttgagattgttttaaagtctggaaaataaatataaatt 392

                                                                       
Query: 304 aaagaaagagtaaaggtacagtaactatttttccttgtgttttcttggaagtataataca 363
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aaagaaagagtaaaggtacggtaactatttttccttgtgttttcttggaagtataataca 332

                                                                       
Query: 364 gtgaaccaacaaatacaaaatattatctcaattttaatcatacagcagtacacaatacat 423
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 331 gtgaaccaacaaatacaaaatattatctcaatttaaatcatacagcagtacacaatacat 272

                                                                       
Query: 424 ttatattaagctaaggatcaacagatgatccacacaataacaataaaatattcttgaaat 483
           ||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 271 ttatagtaagctaagaatcaacagatgatccacacaatagcaataaaatattcttgaaat 212

                                                                       
Query: 484 tacaaacataaaattcttttataaatttttaaatta-atttactctgtgtgcatgtgttt 542
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 211 tacaaacataaaattcttttataaatttttaaattacatttactctgtgtgcatgtgttt 152

                                        
Query: 543 gtctgtatatataagcatgcatgctattg 571
           |||||||||||||||||||||||||||||
Sbjct: 151 gtctgtatatataagcatgcatgctattg 123


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 971
Length adjustment: 10
Effective length of query: 563
Effective length of database: 961
Effective search space:   541043
Effective search space used:   541043
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)