BAC Information

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BAC

Clone NameMSMg01-126D09
Chromosome7 (Build37)
Map Location 126,861,744 - 126,862,199
singlet/doubletsinglet
Overlap geneThumpd1
Upstream gene6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b, Gpr139, LOC100042871, Gp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1, BC048390
Downstream geneEG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3, Tmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126D09.T7 (MSMg01no126_d09.b1)MSMg01-126D09.TJ (MSMg01no126_d09.g1)
ACCAG335091AG335092
length706695
length of high quality
(start - end)
443 (39 - 481)460 (69 - 528)
definitionCHROMAT_FILE: MSMg01no126_d09.b1 PHD_FILE: MSMg01no126_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:30 2005CHROMAT_FILE: MSMg01no126_d09.g1 PHD_FILE: MSMg01no126_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATTCA
CAGAATATCAAAGTAGATCAGCCATATGTCCCAGCTATCCCACTTCATTT
ATGCCCATAGGACTCAACATCCCATTCCACAGATATATGCTTAGCCACAT
TTATTCCTGCTCTATTTACAAAAGCCAGAAAATGGAAACAACCTAAATAC
CTTTCAACTGATGAGTAGATAATGAAAACTAATATAGATACATTATGGAA
TACCATTCATCTATAAATAAAAATGAAATCATAAACTTTGCAGATGAATG
GCTAGAAAAATATACTGAGGGCGGTAACCCAGACTCAGAAAAACACTGTA
TGTTCTCTCTGACTTCAGGATCCTAGCTCCAAACCTTTAGGTTTGAATAT
GGAGTAATCACAAAAACCAGGAAGGTAGAAAGAGATCATGGGGAGAATAG
GGTAGATGAAGGAAGAGAGAGAGAGTGAGTGATACACCCATTTTCATTNC
TTATCGTCTTCAAACTAATTGTTCTCTTAACCATCATTTTGCCATTTTTT
TTCACATCTTGTTCTCCCAATCCCCTTTTTCACCATTTTTTCTAACCATA
TCTTATTTTTTTTTCCCCCTTTTTCACCTTTACTCCTTATACACGTCTTT
CTCACTTTATTACAACTAACCATTTTTACCACCTTCCTTTCCCCTGCTTT
CCTTTA
ATGAAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTTGACTTTCAATGTGGTCACTAATTTGGAA
ATATTAGCACTGTTGTCTTGGGCAGATGTGTTAGTTGGGAAGTAGCCAGT
GAATCACCGTGTCACACGGTGCTCTGTGTGCTGGGATTCTTTCCCAACTG
AGAGCTGGACTTCTGTACTCCTTAACTAATGAATTAGGACTTTAAGTTAC
AGATTTTGTTTTTGTAAAAATATGGTGTGTAATGCTTGTTACTCTAATTT
GTATTACAAGAAGACAACAGTAAGGTGATGTGGTTTAAGTTTGATTCTGA
GACTATCAACATTTATATTTGGTAGGTTCCTGAGAAATACTAGATGGATG
AAAAATAACAACAAAAAAGTCTTGTTTTTTCTTTTCTTTTTTTTTCTTGT
GTTTCTTCTTCTTTTTTTTTTTTCCTTTTTCTCTTAGAACCTGAGAAATT
AGTGCATCATATTCTCCAGGATATGTACCAAACCAAGAAAAAGAAGACAA
GGGTTATTCTACGAATGCTGCCCATCTCAGGCACATGTAAAGCTTTTTTA
GAAGATATGAAAAAATATGCAGAAACATTTCTGGAACCCTGGTTTAAAGC
CCCCAACAAAGGGACATTTCAGATTGTATACCAATTCCCCAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_d09.g1 MSMg01no126_d09.g1 CHROMAT_FILE:
MSMg01no126_d09.g1 PHD_FILE: MSMg01no126_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:30 2005
         (460 letters)



>mm_chr7_126861643_126862503
          Length = 861

 Score =  779 bits (403), Expect = 0.0
 Identities = 445/463 (96%), Gaps = 10/463 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttgactttc-aatgtggtcactaatttggaaatattagcactgttgtcttgggcagat 59
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ctttgactttcaaatgtggtcactaatttggaaatattagcactgttgtcttgggcagat 498

                                                                       
Query: 60  gtgttagttgggaagtagccagtgaatcaccgtgtcacacggtgctctgtgtgctgggat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gtgttagttgggaagtagccagtgaatcaccgtgtcacacggtgctctgtgtgctgggat 438

                                                                       
Query: 120 tctttcccaactgagagctggacttctgtactccttaactaatgaattaggactttaagt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 437 tctttcccaactgagagctggacttctgtactccttaactaatgaattagggctttaagt 378

                                                                       
Query: 180 tacagattttgtttttgtaaaaatatggtgtgtaatgcttgttactctaatttgtattac 239
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 377 tacagattttgtttttgtaaaaatatgctgtgtaatgcttgttactctaatttgtattac 318

                                                                       
Query: 240 aagaagacaacagtaaggtgatgtggtttaagtttgattctgagactatcaacatttata 299
           |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 317 aagaagacaacagtaaggtgttgtggtttaagtttgattccgagactatcaacatttata 258

                                                                       
Query: 300 tttggtaggttcctgagaaatactagatggatgaaaaataacaacaaaaaagtcttgttt 359
           ||||||||| || |||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 257 tttggtaggatcttgagaaatactagatggatggaaaataaaaacaaaaaagtcttgttt 198

                                                                       
Query: 360 tttcttttctttttttttcttgtgtttcttcttctttttttttttt--cctttttctctt 417
           ||||||||| |||||||||||||||||||||      |||||||||  ||||||||||||
Sbjct: 197 tttcttttc-ttttttttcttgtgtttcttc------tttttttttcccctttttctctt 145

                                                      
Query: 418 agaacctgagaaattagtgcatcatattctccaggatatgtac 460
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 agaacctgagaaattagtgcatcatattctccaggatatgtac 102


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 861
Length adjustment: 10
Effective length of query: 450
Effective length of database: 851
Effective search space:   382950
Effective search space used:   382950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)