This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Result
BAC
Clone Name
MSMg01-126L21
Chromosome
7 (Build37)
Map Location
63,646,034 - 63,754,289
singlet/doublet
doublet
Overlap gene
p
Upstream gene
LOC668796
,
Siglech
,
Tubgcp5
,
Cyfip1
,
Nipa2
,
Nipa1
,
LOC672959
,
Herc2
Downstream gene
LOC100040839
,
Gabrg3
,
Gabra5
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC668796
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:668796
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
pseudo
: _no_value
name
Siglech
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:233274
MGI:2443256
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Tubgcp5
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:233276
MGI:2178836
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Cyfip1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:20430
MGI:1338801
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Nipa2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:93790
MGI:1913918
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Nipa1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:233280
MGI:2442058
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC672959
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:672959
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 1090 ESTs, 7 Proteins
name
Herc2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:15204
MGI:103234
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
p
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:18431
MGI:97454
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100040839
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100040839
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 8 ESTs
name
Gabrg3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:14407
MGI:95624
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Gabra5
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:110886
MGI:95617
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Siglech
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142364787
GeneID:233274
MGI:2443256
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: sialic acid binding Ig-like lectin H
transcript_id
: NM_178706.3
name
Tubgcp5
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:46560556
GeneID:233276
MGI:2178836
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: tubulin, gamma complex associated protein 5
transcript_id
: NM_146190.2
name
Cyfip1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:7242204
GeneID:20430
MGI:1338801
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: cytoplasmic FMR1 interacting protein 1
transcript_id
: NM_011370.1
name
Nipa2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142385457
GeneID:93790
MGI:1913918
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)
transcript_id
: NM_023647.3
name
Nipa1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118130095
GeneID:233280
MGI:2442058
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)
transcript_id
: NM_153578.2
name
LOC672959
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149257323
GeneID:672959
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 1090 ESTs, 7 Proteins
product
: similar to 40S ribosomal protein S12
transcript_id
: XM_001478059.1
name
Herc2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:134288897
GeneID:15204
MGI:103234
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2
transcript_id
: NM_010418.2
name
p
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118130387
GeneID:18431
MGI:97454
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: pink-eyed dilution
transcript_id
: NM_021879.2
name
LOC100040839
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149257292
GeneID:100040839
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 8 ESTs
product
: hypothetical protein LOC100040839
transcript_id
: XM_001475373.1
name
Gabrg3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:117168290
GeneID:14407
MGI:95624
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: gamma-aminobutyric acid (GABA-A) receptor, subunit gamma 3
transcript_id
: NM_008074.2
name
Gabra5
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142368955
GeneID:110886
MGI:95617
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 5
transcript_id
: NM_176942.3
name
Siglech
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:30520121
CCDS:CCDS21313.1
GeneID:233274
MGI:2443256
definition
codon_start
: 1
exception
: mismatches in translation
product
: SIGLEC-like protein
protein_id
: NP_848821.1
name
Tubgcp5
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:46560557
CCDS:CCDS21314.1
GeneID:233276
MGI:2178836
definition
GO_component
: GO:0005815 - microtubule organizing center [Evidence IEA]; GO:0000922 - spindle pole [Evidence IEA]
GO_process
: GO:0000226 - microtubule cytoskeleton organization and biogenesis [Evidence IEA]
codon_start
: 1
product
: tubulin, gamma complex associated protein 5
protein_id
: NP_666302.2
name
Cyfip1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:7242205
CCDS:CCDS21315.1
GeneID:20430
MGI:1338801
definition
GO_component
: GO:0030027 - lamellipodium [Evidence IDA]
GO_function
: GO:0005522 - profilin binding [Evidence TAS]
GO_process
: GO:0030032 - lamellipodium biogenesis [Evidence IDA]
codon_start
: 1
exception
: mismatches in translation
product
: cytoplasmic FMR1 interacting protein 1
protein_id
: NP_035500.1
name
Nipa2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31541945
CCDS:CCDS21316.1
GeneID:93790
MGI:1913918
definition
codon_start
: 1
product
: non-imprinted in Prader-Willi/Angelman syndrome 2
protein_id
: NP_076136.2
name
Nipa1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:23956372
CCDS:CCDS21317.1
GeneID:233280
MGI:2442058
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
codon_start
: 1
note
: spastic paraplegia 6 homolog
product
: non-imprinted in Prader-Willi/Angelman syndrome 1
protein_id
: NP_705806.1
name
LOC672959
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149257324
GeneID:672959
definition
codon_start
: 1
product
: similar to 40S ribosomal protein S12
protein_id
: XP_001478109.1
name
Herc2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:134288898
CCDS:CCDS21318.1
GeneID:15204
MGI:103234
definition
GO_component
: GO:0005622 - intracellular [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IDA]
GO_function
: GO:0046872 - metal ion binding [Evidence IEA]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0006464 - protein modification [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IMP]; GO:0006512 - ubiquitin cycle [Evidence IEA]
codon_start
: 1
product
: hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2
protein_id
: NP_034548.2
name
p
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:11230776
CCDS:CCDS21319.1
GeneID:18431
MGI:97454
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0015137 - citrate transporter activity [Evidence IEA]
GO_process
: GO:0015746 - citrate transport [Evidence IEA]; GO:0048066 - pigmentation during development [Evidence IMP]; GO:0007286 - spermatid development [Evidence IMP]; GO:0006810 - transport [Evidence IEA]
codon_start
: 1
product
: pink-eyed dilution protein
protein_id
: NP_068679.1
name
LOC100040839
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149257293
GeneID:100040839
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001475423.1
name
Gabrg3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:117168291
CCDS:CCDS21320.1
GeneID:14407
MGI:95624
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0045211 - postsynaptic membrane [Evidence IEA]
GO_function
: GO:0005254 - chloride channel activity [Evidence IEA]; GO:0031404 - chloride ion binding [Evidence IEA]; GO:0005230 - extracellular ligand-gated ion channel activity [Evidence IEA]; GO:0004890 - GABA-A receptor activity [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0030594 - neurotransmitter receptor activity [Evidence IEA]
GO_process
: GO:0006821 - chloride transport [Evidence IEA]; GO:0007214 - gamma-aminobutyric acid signaling pathway [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA]
codon_start
: 1
product
: gamma-aminobutyric acid (GABA-A) receptor, subunit gamma 3
protein_id
: NP_032100.2
name
Gabra5
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:30578386
CCDS:CCDS21322.1
GeneID:110886
MGI:95617
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0045211 - postsynaptic membrane [Evidence IEA]
GO_function
: GO:0005254 - chloride channel activity [Evidence IEA]; GO:0031404 - chloride ion binding [Evidence IEA]; GO:0005230 - extracellular ligand-gated ion channel activity [Evidence IEA]; GO:0004890 - GABA-A receptor activity [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0030594 - neurotransmitter receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]
GO_process
: GO:0008306 - associative learning [Evidence IMP]; GO:0001662 - behavioral fear response [Evidence IMP]; GO:0006821 - chloride transport [Evidence IEA]; GO:0007214 - gamma-aminobutyric acid signaling pathway [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA]
codon_start
: 1
note
: GABAA receptor alpha5 subunit; ligand-gated ion channel subunit
product
: gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 5
protein_id
: NP_795916.1
name
LOC668796
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668796
definition
number
: 1
pseudo
: _no_value
name
LOC668796
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668796
definition
number
: 2
pseudo
: _no_value
name
LOC668796
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668796
definition
number
: 3
pseudo
: _no_value
clone name
MSMg01-537H13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-338N02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-291G18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-508O15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-126J13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-121P23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-129P05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-167P21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-161D04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-359G17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-068N14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-263B20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-124A12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-116C05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-458J03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-461D10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-402L12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-529P06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-139J17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-523O23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-296F21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-444L21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-145K13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-489L11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-233J10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-075N06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-079J20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-129E09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-541E24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-438M18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-544A17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-306G15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-170F21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-415E07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-111H10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-126L21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-405C02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-410L01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-501O20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-528D05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-389L04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-535J24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-273N20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-377P13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-342D19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-305A01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-376A22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-208O02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-506F09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-290P02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-180P13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-394M24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-160A01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-468A04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-517H15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-518O10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-330G21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-505I23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-333P13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-080F16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-459L02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-348C03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-130F24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-377B20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-288A20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-546H13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-321B22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-351K11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-434L21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-521M11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-190C05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-183C05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-508C03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-531D04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-129A14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-497M21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-272G11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-437O01
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-143J06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-188M15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-476K15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-158B03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-085O17
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