BAC Information

Click to search

BAC

Clone NameMSMg01-127B14
Chromosome7 (Build37)
Map Location 121,440,649 - 121,440,983
singlet/doubletsinglet
Overlap genenone
Upstream geneArntl, Btbd10, Pth, LOC100042736, Mlstd2, EG434228, Spon1, Rras2, LOC668451, Copb1, Psma1
Downstream gene4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967, LOC668472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127B14.T7 (MSMg01no127_b14.b1)MSMg01-127B14.TJ (MSMg01no127_b14.g1)
ACCAG335738AG335739
length721712
length of high quality
(start - end)
---335 (74 - 408)
definitionCHROMAT_FILE: MSMg01no127_b14.b1 PHD_FILE: MSMg01no127_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:44 2005CHROMAT_FILE: MSMg01no127_b14.g1 PHD_FILE: MSMg01no127_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCAAAATTTGCGGCGCTAAACGACTACTATATTCCGAGATCCGCGGAAT
TCCCTACCTTTCCCGGAACCATGTGCAGAGGCAAACACTGTGATGTCGAT
GGCGTGTATCCACTACCCCCCCTCCGTCATTTTATATATATAACAAGCGC
AAATATCAAAGCTGTCTGCAGGGCTTCTTCCTATTGCACTCTGTACTACA
TGGCCTGTTCACATCGGCATATAATTCCGTCAAGAACTGCCTCTGCCCAT
TACAATGACATGCCTTGTATAAGCTTCTAAAGCTAAGGCATCTGTGCACC
CCCAATAACCCAGAAAAGTTTTTCATAAATACCTAATGACTGCTCGATCT
CAGCCTCTGTCTTCAGCAACACCTCTCATACTATGTGATATCTTTCATCC
TTTTGCAACCACCCACCTTCACAAACATGCACACACACATTCTGTACTCT
TACATATACCACAATGACCTATGTACCCATTATGCTACACATGGGAATCT
TACAGCACAGTATTGTGCTACACAGGCGACTCTCCAGATAAACTATCATT
ACTCGTTAACATCGCGCCTTATTCATGTACTGTTACCCAATAACCCCTTT
CACCCCGCGAAGATCCACAATGCCGGCCATATTTCTCAGCCGCCTCCCTT
TTATTGCGCTTTCAATACCCCATCACCTGATTTTTCCCCATACCTTGCAT
ACACGCCCATGTATTCAGTGC
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACCAACCATGGCATAGTCTTTCATGCA
AATGAAGGATCTTGTTTGCACCAGTCACAGATCACCACCAAGGGAACCGA
TCCTGCACTTGCTTCAGTGAAAAGTGCCACAGGGTCAGGAGAAGTTCTCC
AAGGCTTGTTTTGCTTAGAAGGTAGCTTTCAGAAGCTGGTGTGGGCTTTG
TGGTGGGGTGATGACTGGAGTGTGTGCTCAGCTGTGGCTGTAGGGTCTCC
CTGACGCTGGAGCACACTCCAAGTAATTGTAAAGTGTCTAAAATAGCTGG
GCTGCCACGAGGACTGTGCTTGGTCAATAGTTCCACACTGAACAATGTCA
GGCGCAAGGGACCCCACCATCAAATATCATCTTTTGATGGTTTTAATTAT
TCATATAAAACATTAAATGGGTGCTTACAAGACTAGGGAGCTTACACTCA
TTAAAGCACTTGGTGTGCAAGCATGAGAGCCTTAGTTCATATTCCCAGCA
TCCTTGTAGCATTGGTACAGTGACACACACCTATAATTCTTAAGCACTGA
AGATGCTCTAGTACTCACTGGGTCACCAGTCCAACCGAGTCAGTGAACTC
CAGGTCCATTGAGAGATCCTGTCTCAAGCTCTGACCTCCATATGCTTATT
TGTACATGTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_b14.g1 MSMg01no127_b14.g1 CHROMAT_FILE:
MSMg01no127_b14.g1 PHD_FILE: MSMg01no127_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:44 2005
         (335 letters)



>mm_chr7_121440449_121441183
          Length = 735

 Score =  632 bits (327), Expect = 0.0
 Identities = 333/335 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaaccatggcatagtctttcatgcaaatgaaggatcttgtttgcaccagtcacagatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 accaaccatggcatagtctttcatgcaaatgaaggatcttgtttgcaccagtcacagatc 476

                                                                       
Query: 61  accaccaagggaaccgatcctgcacttgcttcagtgaaaagtgccacagggtcaggagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 accaccaagggaaccgatcctgcacttgcttcagtgaaaagtgccacagggtcaggagaa 416

                                                                       
Query: 121 gttctccaaggcttgttttgcttagaaggtagctttcagaagctggtgtgggctttgtgg 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 415 gttctccaaggcttgttttgcttagaaggcagctttcagaagctggtgtgggctttgtgg 356

                                                                       
Query: 181 tggggtgatgactggagtgtgtgctcagctgtggctgtagggtctccctgacgctggagc 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 355 tggggtgatgactggagtgtgtgctcagctgtggctgtagggtcttcctgacgctggagc 296

                                                                       
Query: 241 acactccaagtaattgtaaagtgtctaaaatagctgggctgccacgaggactgtgcttgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 acactccaagtaattgtaaagtgtctaaaatagctgggctgccacgaggactgtgcttgg 236

                                              
Query: 301 tcaatagttccacactgaacaatgtcaggcgcaag 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 tcaatagttccacactgaacaatgtcaggcgcaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)