BAC Information

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BAC

Clone NameMSMg01-127C12
Chromosome7 (Build37)
Map Location 119,848,879 - 119,849,122
singlet/doubletsinglet
Overlap geneTead1
Upstream geneGalntl4, LOC668399, LOC100042678, Usp47, Dkk3, Mical2, Micalcl, Parva, LOC627808
Downstream gene4632411J06Rik, LOC434227, Arntl, A630005I04Rik, Btbd10, Pth, LOC100042736, Mlstd2, EG434228
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127C12.T7 (MSMg01no127_c12.b1)MSMg01-127C12.TJ (MSMg01no127_c12.g1)
ACCAG335780AG335781
length735723
length of high quality
(start - end)
194 (67 - 260)245 (70 - 314)
definitionCHROMAT_FILE: MSMg01no127_c12.b1 PHD_FILE: MSMg01no127_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:48 2005CHROMAT_FILE: MSMg01no127_c12.g1 PHD_FILE: MSMg01no127_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTACATCCCGATCCAAAACAGCAGAGGGAGATTGAGCCTGACTTCTTGGA
CCTCAAAGCCTGCCTCTAGTAACACACTTCCTCCAACAAGGCCACACCTC
CTAATAGTGACATTCCCTATGACTATTCAAACACATGAGTCTATGGGGGT
CACTTTTATTCAAACCACCACAGTTAATAAGCTTTATTTTTCATTGGGGG
GGGTGTTTGTCCTGCTTTCTTTTCTTTACATTCCCCGACCCTTTTCTTAA
CCGTCCGTTTTTTTTTTCCTCCTTTTCAACCCTTTCTACCTTATTCCATT
TTTTTTTTTTCTTCCCCCCCCCCCCCCCTTTTCTACTTTATTTGTTAATT
ATCTGTGGGGGGCCCCCCCACATAAAAAAAACATTTTTGTTCCGTTCTTT
CGCTACTTTCTTCTACCATCTTATCCCTCTCCCCCTCTTCCCTCCCCTTT
TACCTCATTTACTTATCTATCCCTTCCTTCCCTTCCCTTCATCATTTCTT
TTCTCCCCTCTTTTTCGACTCCCCCTTATATACACCGCATTTTTTCTCCC
TTACCTCCCTTTTTTTTTTTCCTTTTTTTACCCCTTCACACTTTTCCTCC
CCTATTCCCTTTCACATTTTTCCTCTTTCTCTTTCTTTTCCCCTCCTTTA
TCTCCTCCTATACACCCTCTTTCTGCTCCCTTTTN
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATCTCTCAGTTCAGACTCCAGTGGAGAATGAACT
GAAATTTCATGCCACCCTCTGGGACGGGAAGAGAATCAGCTAGAACCCCA
GATATGACCCCTTTCAGAGACTCAGCTTTTCTGTCCACTGAGAACAGGTG
ATTAGTTCCCCTGACTAGTTGACCAGACTAGCTTCTTTGACTAGTACCCT
GATTAGTCTCCTGACTATGAACGAGTACTCTGATTAACTTCCCTAAACAT
CTACAAGACAGGGCTTCTCTTTATTTTTCTGGCTGTCCTGGAACTCACTT
TGCAGACCAGGGTGGCCTCGAACTCAGAAATCCGACTGCCTCTGCCTCCC
GAGTGCTGGGACCACCCCCCATGTGCCACCTCGCCCGGCGAAATCTTCCG
CTTTTGTTTTCATTGCTATACATTCTGGCAAAGTATAACCCTTACTATCT
CTGATCTACAGTTCCCAAAATTAATAACACTCTGGACTATTGCCCCTTCC
TTCGTATCTCTTTTTCTGCACTCCCTTCTATCGCCCGTCCTTCACCGTTC
CTCTTTTTCCCCTCTTCCTTTCTACTACACCTATTTTTTATCTTCCCCTT
TTCCCCCTGTTTATTTTTTCCCGTTGTATACAGTTTGCCCACCCAATGAT
TAATGTACCCTTACTACACACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_c12.g1 MSMg01no127_c12.g1 CHROMAT_FILE:
MSMg01no127_c12.g1 PHD_FILE: MSMg01no127_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:48 2005
         (245 letters)



>mm_chr7_119848679_119849323
          Length = 645

 Score =  426 bits (220), Expect = e-124
 Identities = 238/244 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcagttcagactccagtggagaatgaactgaaatttcatgccaccctctgggacggga 60
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 444 tctcagttcaaactccagtggagaatgaactgaaatttcatgccaccctctgggacagga 385

                                                                       
Query: 61  agagaatcagctagaaccccagatatgacccctttcagagactcagcttttctgtccact 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agagagtcagctagaaccccagatatgacccctttcagagactcagcttttctgtccact 325

                                                                       
Query: 121 gagaacaggtgattagttcccctgactagttgaccagactagcttctttgactagtaccc 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gagaactggtgattagttcccctgactagttgaccagactagcttctttgactagtaccc 265

                                                                       
Query: 181 tgattagtctcctgactatgaacgagtactctgattaacttccctaaacatctacaagac 240
           ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 264 tgattagtctcctgactatgaacaagtaccctgattaacttccctaaacatctacaagac 205

               
Query: 241 aggg 244
           ||||
Sbjct: 204 aggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)