BAC Information

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BAC

Clone NameMSMg01-127N02
Chromosome7 (Build37)
Map Location 124,838,834 - 124,839,224
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546993, LOC100043330, Xylt1
Downstream geneLOC669758, Rps15a, Arl6ip1, 2610207I05Rik, LOC100043339, Syt17, LOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5, Mir16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127N02.T7 (MSMg01no127_n02.b1)MSMg01-127N02.TJ (MSMg01no127_n02.g1)
ACCAG336252AG336253
length730711
length of high quality
(start - end)
---390 (75 - 464)
definitionCHROMAT_FILE: MSMg01no127_n02.b1 PHD_FILE: MSMg01no127_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:42 2005CHROMAT_FILE: MSMg01no127_n02.g1 PHD_FILE: MSMg01no127_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGACCGCGGAA
CCCTTTCATATATGCCCAAAGAANATTTCCTTACTAAACAACCCATTTTC
TTGTTAAATCCGTATCGAGCCGCCATAATAGGAATTAGCTTGTCTTGCCC
CCTCCTCACTGCTGCACAGCTCCTATCGATCTCACAGATTGCTCCTGGGC
AAGCTTTCCTGAGCTCACCTTGACTGCAGTACGAGGACCTTTTTAGCTAC
GTAGTCTCTCTTCGATTCTTGAATGACTGCCAATGAGACCTCTCCTCTCA
ATGTCCGACCCTTCCACCTGCTCCTCTCTGCTATTACACCTTACCACCCC
CCCCTCTCAATGTACATCCAGATTTGCCTAGCTCCTCAGATGACTTGGTT
TAAATGCTGTGTCTTCCCTGAGCTATCATGCCCATTCTATTGCGTGTTTG
TGTTCCCTTTTGCCCTTGTCCCCTGATACCCACCCTCCCTTTTTCCTCTC
ACTTTTGTCCACCCCCCCATCCCGCCCCTTTCTCAATCGCCTACCCATTT
ATATTCACCCAATGTTCGTTTCCTTCTTCCCCTTACCCCCCTTTGCCCCC
CCCCTCCTTCCCCACCGTTTCCCTCTCCCTTTTTTGTACACCCCCTCCAT
TGTATTTCCGCCTTCACCCTCTCTCATCCACCTTTTTTTACACCTTCTCC
TTCATTTACACCCCCGCATTCTCTTTACCG
NCATTGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGCCCCACACGCTCATCATTGAATGT
TTGATCTTAGTGGCACTATTCTGGAAACTTTAGGAGGTGGCACCTGGATG
AAGGAATTAGGACACTGGAGCTATAGCTTTCAAGGTTCTATCTGGCCCCT
GAGTCGCTTACTCTCACCCCTCTTCTTGTCTACCCAGAGATGATGAATTT
CCCCTGTCACTCACTCCCAGCCTCTGATATACTATGTCAGTGCAGGCTCA
GAATCAGCTGAGCCAAGGACTGTTAGATGAAAGATCTGAAACCACAAGGT
AAGTCTTTCTTCCCTTAATGGGTTCTCTCTGTTCCATGGTACCAGGAACG
AAATACTAGCACAGCCCCCTTGCCAGCTGCAGCACTTGGGAAAGCAGGCC
CCACACCTTGCTTGGGCAGCACAGCATAGTTGGCCCTGGCGGCATGGGTG
GAGAAAAGCAGGTTTCAAGTGTATAATCTCTAGAGATGTTCTTGTCCCTT
GCCAGGGCAGCGCTGGAGAGCTGATCCTGTTGGTTGGTCGTGGAAAAGCT
GATCCTGATGTTGTAACTGTGGCAGTTCTGGTGCCCTCTATACCCCCTCT
ACCCTCCATTACCCAGATTTCGGTCTTCTGATCTGTGCCTTCCTAACATT
CTTCTCCTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_n02.g1 MSMg01no127_n02.g1 CHROMAT_FILE:
MSMg01no127_n02.g1 PHD_FILE: MSMg01no127_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:42 2005
         (390 letters)



>mm_chr7_124838634_124839428
          Length = 795

 Score =  659 bits (341), Expect = 0.0
 Identities = 377/391 (96%), Gaps = 5/391 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgccccacacgctcatcattgaatgtttgatcttagtggcactattctggaaactttagg 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 tgccccacacgctcatcattgaatgtttgatcttagtgacactattctggaaactttagg 260

                                                                       
Query: 61  aggtggcacctggatgaaggaattaggacactggagctatagctttcaaggttctatctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtggcacctggatgaaggaattaggacactggagctatagctttcaaggttctatctg 320

                                                                       
Query: 121 gcccctgagtcgcttactctcaccc----ctcttcttgtctacccagagatgatgaattt 176
           ||||||||||| |||||||||||||    |||||||||||||||||||||||||||||||
Sbjct: 321 gcccctgagtcacttactctcacccctctctcttcttgtctacccagagatgatgaattt 380

                                                                       
Query: 177 cccctgtcactcactcccagcctctgatatactatgtca-gtgcaggctcagaatcagct 235
           ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 381 cccctgtcactcactcccagcctctgatatactatgtcaggtgtaggctcagaatcagct 440

                                                                       
Query: 236 gagccaaggactgttagatgaaagatctgaaaccacaaggtaagtctttcttcccttaat 295
           |||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 gagccaaggactgggagatgaaagatctgaaaccacaaggtaagtctttctttccttaat 500

                                                                       
Query: 296 gggttctctctgttccatggtaccaggaacgaaatactagcacagcccccttgccagctg 355
           ||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 gggttctctctgtaccgtggtaccaggaacgaaatgctagcacagcccccttgccagctg 560

                                          
Query: 356 cagcacttgggaaagcaggccccacaccttg 386
           |||||||||||||||||||||||||||||||
Sbjct: 561 cagcacttgggaaagcaggccccacaccttg 591


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 795
Length adjustment: 9
Effective length of query: 381
Effective length of database: 786
Effective search space:   299466
Effective search space used:   299466
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)