BAC Information

Click to search

BAC

Clone NameMSMg01-128A23
Chromosome7 (Build37)
Map Location 126,743,017 - 126,743,195
singlet/doubletsinglet
Overlap genenone
Upstream geneTmc5, Mir16, 6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b, Gpr139, LOC100042871, Gp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2
Downstream geneAcsm1, BC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3, Tmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128A23.T7 (MSMg01no128_a23.b1)MSMg01-128A23.TJ (MSMg01no128_a23.g1)
ACCAG336430AG336431
length715715
length of high quality
(start - end)
176 (121 - 296)180 (81 - 260)
definitionCHROMAT_FILE: MSMg01no128_a23.b1 PHD_FILE: MSMg01no128_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:02 2005CHROMAT_FILE: MSMg01no128_a23.g1 PHD_FILE: MSMg01no128_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATAATTGCGCCGCTAAACGACTCCTATATTCCAAAATCCGCGGAATTCT
CGTGTGTTTCCAACGAGAAGCAGAGAATGAGAAGAAAATATCACAAACCA
ACAATACAAACAATGTGCCCCTGACTGTGTCATCTCTGCTGTGTGTAGCA
TGGTGCAGGACACATTCATGCACTTTTTCAACCACATAGTTCTGTATTCA
TTTAGTTTCATTTCATTCTGAGGTGGTACTCAAAGCATTGTGTATGCTAG
GTAAAAGCTCTATCACTGAGCTACACTGCCAGCCCCTGGGATTTTGATTC
AGGGCCTCAACTGTCCCATTTTAGCCTTACATTTGTGGCCCTTGTGCCTC
AGCCTCCTGAGTGCTTGGATTTTAAGCATGTACCACCGTGCCTGGCTCAT
GGAGAGAATTTGTTAAACATCCACTCTGCGATGTGCATAGCTTTAAAAGG
TGAATTTCCACCAGTGACTTAACAGACAAGGTCTCTATTCTTGTGTATCC
TTGAGCTGACACTGTTGCATATAAGGCAATGGAAAATAATATTAACACCT
TAACTATGCCCGACATTACTTTTGAGTAAGTCATGCTTTCTGCCAGATAC
ACTTATTATTTTTTGAAAGTTATAAAATGTTCAGTCCCTCCCTGCTCTGG
CCGGCTGTCTAAGATCCTATTATTATTGTCCCACCTTTACTGTCCCAATG
TTGATTTTGTTCCTG
AATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTCTCAATCACTGTTCTTATAAAGCCA
CTAATCCCATCACGAGGGATCCCCCTTCATGAACTCCACTTATCCTGGAT
AAGAAGGCCAGTTCAAGTACAGTCAACATATGAACTTGGGCACAATTTAA
TCCTATCCATCAAATTCTTTCAACACCCAAGTTCTTCAACTAAAGGTCTT
ACATGTATTGGAGCGTGCATGTGTGTGTTTGTGTGTGAGTGCACACATGT
ATTCCACTACTATTCTTTCAAATTTTCAGCCCACAGAATTTGTAAACATA
GCGAAATGGCTGCTTTAAATGGCCCTGCCTGAGGTTTATTTTTTATGCCA
AAGTATGCAAACATGATAGGCTGGATCAGAATGAAGGCAGCTAGGGTCAT
AACTGCATGACAGCATTGATTCCTCTTAAAGGTAAAGGGCTTCCGCTATG
CACGACATTTAAAGCAGGTCTCATATGCTGGACCCTTAGTAATGGTATAT
AGCAAAACCCATTCTCTTGGTGTCAGAGACTCCTTAGATAAGGAAGGTGG
TGAGCTTTGCTTGTCTTCCCAGTGCTAGTGATGGAGAGTTTGTGCAATTC
CTGCTCCTTACTGGTGATCCCCTAGGTTCCTTGAAACTCGTTCCTAAATT
GGATGTATTGTGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_a23.g1 MSMg01no128_a23.g1 CHROMAT_FILE:
MSMg01no128_a23.g1 PHD_FILE: MSMg01no128_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:02 2005
         (180 letters)



>mm_chr7_126742751_126743330
          Length = 580

 Score =  323 bits (167), Expect = 4e-93
 Identities = 176/179 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcactgttcttataaagccactaatcccatcacgagggatcccccttcatgaactccact 60
           ||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||
Sbjct: 445 tcactgttcttataaagccactaatcctatcatgagggatccaccttcatgaactccact 386

                                                                       
Query: 61  tatcctggataagaaggccagttcaagtacagtcaacatatgaacttgggcacaatttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatcctggataagaaggccagttcaagtacagtcaacatatgaacttgggcacaatttaa 326

                                                                      
Query: 121 tcctatccatcaaattctttcaacacccaagttcttcaactaaaggtcttacatgtatt 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcctatccatcaaattctttcaacacccaagttcttcaactaaaggtcttacatgtatt 267


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space:    98384
Effective search space used:    98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)