BAC Information

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BAC

Clone NameMSMg01-128B02
Chromosome7 (Build37)
Map Location 123,087,844 - 123,088,128
singlet/doubletsinglet
Overlap geneSox6
Upstream geneLOC668472, LOC100042779
Downstream gene1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128B02.T7 (MSMg01no128_b02.b1)MSMg01-128B02.TJ (MSMg01no128_b02.g1)
ACCAG336436AG336437
length716703
length of high quality
(start - end)
289 (62 - 350)249 (57 - 305)
definitionCHROMAT_FILE: MSMg01no128_b02.b1 PHD_FILE: MSMg01no128_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:02 2005CHROMAT_FILE: MSMg01no128_b02.g1 PHD_FILE: MSMg01no128_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACT
TCATCACACCAATGCTGAACATGTTCAACAGAAATATCACATAGGTGAAT
TAGTAAAGAAGGAGGCAGTGTTTGTTCTACACAGGGGTGGAGTGTTAGCT
GCTGAGGCTGTGCCCTGCATCCTGCATGGCCACAGTTCTACCCAGCATTC
TCATGCTTGCACACACTTCAGTTACACTGAAGTAGCAGATGTAGTTCAAA
CATGCAGAGCCGGCGTTATAAAACTATACTAGCACAATGAGTCACTTATG
CCTCTAAATATCTATGGTTTCCTCCCTCCGGAGCCCCCATGCATTATAAA
GCACTTAGGTCGTTTGCTTTTATTGTTTGGCCTAAATAAAGCACATTTTG
GTTCCATGAAAACAAAGGAACTTTGTTACAGAGGCTGTACTCCTTTTAGA
ATGTGAAGATGCTGATGAGTGGCGTTTAATCGACAGTAATGACGGAACTT
AAGTCACTAACCCCCAGGAACTTTCCTGGACTCTATCCATTGAGTTTGAC
TCATTCTGCGCCTTCAAAAATGTACACGGTAAATCCCCCGTGAGAACTCA
CTAGGTTAAGCAAAAATCATTCCTGATAACATTAACAAATATTTTGTTCA
CATATATTGTCTCGCATAACCTATTTATACTATGTTTTCACAATCCTTTA
CCACCCGATTCAACAC
TGGTGGCCGCCTGTTTTCCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTAAGGGAAAGTGATTTTCAACCTATAATTCTATACACAAGCAAT
CAATAAAATGCCAGAATAGATACATTTTCTAATATGCAGCAAATACAATT
TTCCTTCCATTTATTATTTTTGCTAAAGAAAGTCTTAGAGATTTGTCTCC
AGGAAAATGAATTAAGGAAAGCAAGGAAAAGGAATATGTGGAACCCATTG
CAGCAGAGTCTAAAGGCAGCCACTAGTGTCTGCAGTGAGGACTGAGGAAT
CTAATACTGCAGAGTCTAAAGGCTGCCAATACTGACTGCAGGGAGGGCTG
ATAGCAGTGTGAGCAGAGGTGGAACACAGGGCTAGTCCTTACAGTCAGGT
CTCTACAGTGAGCCAGAATCAACAGCAAGAGTATGTACACACTAACAGAT
TTGCTGTACGGAATCTCGAAGATAGGCTTATGATGTGAGATATTTAGGTC
ATTGGGGCATGTTCCAAAAGAAGATTGCGGAGTCTTGGATCCTTCCTTTC
GCTGCCATTGGCTTCTTATAAATGAGGAAAGTGCGTTGTTCTAACTACCA
ACTTCTGCATGCGAGAGCACATGTCCCTCTGAGGTCAGAGGCGTTAGCAT
TTCCGCAAACTGCAGCCCCCATGACTTGTCGAGCTGTCTGAATGAGGCAC
TAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_b02.b1 MSMg01no128_b02.b1 CHROMAT_FILE:
MSMg01no128_b02.b1 PHD_FILE: MSMg01no128_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:02 2005
         (289 letters)



>mm_chr7_123087644_123088332
          Length = 689

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgctgaacatgttcaacagaaatatcacataggtgaattagtaaagaaggaggcagtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgctgaacatgttcaacagaaatatcacataggtgaattagtaaagaaggaggcagtgt 260

                                                                       
Query: 61  ttgttctacacaggggtggagtgttagctgctgaggctgtgccctgcatcctgcatggcc 120
           ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 ttgctctacacaggggtggagtgttagctgctgaggctgtgccttgcatcctgcatggcc 320

                                                                       
Query: 121 acagttctacccagcattctcatgcttgcacacacttcagttacactgaagtagcagatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagttctacccagcattctcatgcttgcacacacttcagttacactgaagtagcagatg 380

                                                                       
Query: 181 tagttcaaacatgcagagccggcgttataaaactatactagcacaatgagtcacttatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagttcaaacatgcagagccggcgttataaaactatactagcacaatgagtcacttatgc 440

                                                        
Query: 241 ctctaaatatctatggtttcctccctccggagcccccatgcatta 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctaaatatctatggtttcctccctccggagcccccatgcatta 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)