BAC Information

Click to search

BAC

Clone NameMSMg01-129E09
Chromosome7 (Build37)
Map Location 63,325,485 - 63,325,669
singlet/doubletsinglet
Overlap geneHerc2
Upstream geneLuzp2, LOC668796, Siglech, Tubgcp5, Cyfip1, Nipa2, Nipa1, LOC672959
Downstream genep, LOC100040839, Gabrg3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129E09.T7 (MSMg01no129_e09.b1)MSMg01-129E09.TJ (MSMg01no129_e09.g1)
ACCAG337324AG337325
length730733
length of high quality
(start - end)
271 (38 - 308)185 (177 - 361)
definitionCHROMAT_FILE: MSMg01no129_e09.b1 PHD_FILE: MSMg01no129_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:37 2005CHROMAT_FILE: MSMg01no129_e09.g1 PHD_FILE: MSMg01no129_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCT
TAATATCCCGAATTTCTTTGATGTTTGTCGGACTGCTTCCTATTCACTTG
TGGTTCTGTTAACTGGCATTCGTTCTTTCTTCTCATTAGTTGGGTAAAGG
ACTGGTGACCTTGTTTATCTTACAGAACCAGCTCAGAGGTTTGTTGGTTC
TTTGTATTGTTTTCCTTGTTTCTATTTCATTAGTTTCTGCTTTTTTTTTT
TTTTTAAATCTTGCTGAGTTGGTTTGAGTTAGGGTTTTTTTCCCTTGGCT
TTTCCAAAATTTTGTTTTGCATCATGAACTTATTGATTTGTCCTCTTTAT
AATTTATCATTATGCTCTGTGTATGGATAATTTGCCTGCATGTATGTCTC
TGTAACCCCGCCCTCTTTCGTTTGTGTGTGTATTTGCGCGGGACATGTAC
TTATTGAATTACGTGTGGTTGACGTCAGATGTTTCCTTCTGTGCCTTTAA
CTTACCTTTTTAGATAGGATCTCTCTCTAACCCTAGAGCTTATTGATTTT
GCCTGCCTTGCTCGCTTTTGAGCTTTATGCTTCACCGTATGCTCTGTCTG
CCTCACTCTTCTGCATGTGTTTCTTGGTTATCTCAGTTCCCGCATTTAAC
GCTGCTTTGTACCCGTCTATTTCTCCATCCGTATATCCAGTTCTCACTGT
CTCTACTTTGCCGTCCCGAGTACCTTCTCG
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAGAGTTTCAGTTGTAAAGAAAA
TGACTGAATAAAGTGTCATTCTTACCCCCAAAAAAAAAAAAAAAAAAAAA
AAAAAACTATTTGGATTAAGATGGGGACTACAGGAACACACATGGAAAGT
TCACTGTATTACAGATCATATTACTTACTTTCACTTCTTCAGGATGGAAA
TTTTTTCACAGTTAACAAGAACATCTCCAAATACACTTTAGGCTTTATTC
TCAGGAACACAAATCAAAATACCAAAGCAAGAACAAGGTAATTCCCTCGA
GAGCGCGATGAATATTATTTTAATTACCACCCCCGGCTCACAGGAAAAAA
CTTTACTTTAGTGTCTATACACCCCCCTTTTCATGACTGCAGGAATCAAA
AGATACTCTATACCCAAAACACAAATTATCCAAACACAGAGTAACCCCAG
AAACGCTCGAAATAATAAAGAGGTGTATCTCAGCAGTACAGTACGTTACT
AAGTACACTCTGTCCCCAGCAGTATACTTGTGTACATGCACAAACACACT
TATTATCTCCCACCCTTATTGCCCAGAACAACAATACTATAGGCTACCCT
TCTTAAGGTCCCAGTAATCCCAAAGGTTACTGTACATACTAGTTCCAGGC
TGGCTGTCCCCTTCATCTGACGACAAGTTAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_e09.g1 MSMg01no129_e09.g1 CHROMAT_FILE:
MSMg01no129_e09.g1 PHD_FILE: MSMg01no129_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:37 2005
         (185 letters)



>mm_chr7_63325285_63325869
          Length = 585

 Score =  319 bits (165), Expect = 6e-92
 Identities = 180/185 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   actacaggaacacacatggaaagttcactgtattacagatcatattacttactttcactt 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 385 actacaggaacacacatggaaagttcactgtattagagatcatattacttactttcactt 326

                                                                       
Query: 61  cttcaggatggaaattttttcacagttaacaagaacatctccaaatacactttaggcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttcaggatggaaattttttcacagttaacaagaacatctccaaatacactttaggcttt 266

                                                                       
Query: 121 attctcaggaacacaaatcaaaataccaaagcaagaacaaggtaattccctcgagagcgc 180
           |||||||||||||||||||| ||||||| |||||||||||||||| ||||| ||||||||
Sbjct: 265 attctcaggaacacaaatcagaataccagagcaagaacaaggtaagtcccttgagagcgc 206

                
Query: 181 gatga 185
           |||||
Sbjct: 205 gatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 585
Length adjustment: 8
Effective length of query: 177
Effective length of database: 577
Effective search space:   102129
Effective search space used:   102129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)