BAC Information

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BAC

Clone NameMSMg01-130A24
Chromosome7 (Build37)
Map Location 27,621,255 - 27,621,582
singlet/doubletsinglet
Overlap geneCyp2a5
Upstream geneEG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968, Cyp2a4, Nlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745
Downstream geneEG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130A24.T7 (MSMg01no130_a24.b1)MSMg01-130A24.TJ (MSMg01no130_a24.g1)
ACCAG337912AG337913
length6971,142
length of high quality
(start - end)		311 (387 - 697)767 (130 - 896)
definitionCHROMAT_FILE: MSMg01no130_a24.b1 PHD_FILE: MSMg01no130_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:41 2005CHROMAT_FILE: MSMg01no130_a24.g1 PHD_FILE: MSMg01no130_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:41 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NAAAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGCGGGCGGGGCCAGCAAGCTACCTTCGACTGGCTTTTCAA
AGGCTATGGTGAGAGGGTCTTGATACNCGCGAATGAGGCAGAGGACATTT
GAGAGCATCATTCCCACCCCTGGTCCCCCCACCTCTGACTTTTCCACCCC
TCCAGGCTATCTTCTCCCCACGTCCCTGCCTCCCACTGTGTCTAGTCTCA
GACTCATCTCTCTGACTGTATTTCTTGATTCCCCCACCTCCACCCGTGCC
TCCTCTTCCACCTTGAAATTCCTCTGTCGGAATCCTGCGCCTCTAGCAGG
ATCCGAAGCTTCCCTGTATTTTACGCCATCCTTTCCAGCTTCGGTGATTG
CTTTCTCTCTTCCTCTCCCTTGCTTTCTACTATCAATTCCCAGGAACTGT
CTCCCAGCAACAATGTCTCCTCTCTCCAGACTCTCTTTGGGTCTCTCTCT
TTATTTCCGTCTCTTTTGTTGCTCAATTATACATCTTTCTCAACAATAAT
CGCCACCAGATCTCTTCAGTCTCCTGTCTCTCGCCTCTGTCTCTGCCCTT
CTGTCTCCCTCTTCTTACTGTCCTGTTACTCGCTCTCTTTTATCTATAGT
TTTCTTGGTGCCTTCTTGTGTTTTGCATTTCCATTTCTAATGATCTG

NCCCGGCACTTNNNNNNACGCATGGAXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATTTTAGGAGAGCCTAGAA
AAATAGCCCGGGAGCCAACGGCCTTTACAACACAGCTACAAAATGAGATC
AACATGGGATTCCTTTTGACTCACCCCCGTTGCTACTGCAACATGGCCGA
AGGTAGGGAGAGCTTAAAAAAATCTATCGCCAGGCTCTGGTCTCCAAGGT
GCCTCAAGATGGGCCCACTAATTTGGCTAAGGTAAGAGGTAATGCAGGGG
CCGATTAAACCTCCCTCAGTATTCCTTGAAAGGCTTATGAAAGCCTTCAG
GCGGTTCACTCCCTTTGATCTTACCTTGGAAGCCCAGAAGGCCTCAGTGG
CCCTGGTCTTCATTAGGCAGTTGGCCCCCAATATCAGAAAGAAACTTCAG
AGATTAGAAGGTGTATTACACGACCGAGACAGTTACGCGATCTAGTGAAA
GAGGCAGAGAAAGTGTGTGTGTGTGAGAAAGTGAGAGGTGGGTGGCAGAA
GAAAGAGAAAACAGGAAGGATCATAGACAAAAAAGAAATTTGACTAGAAT
CTTGGTCAGAGTGGTAAGAGAGAAAGAAAAGACAGGATCTAGACAGGAAA
CCTGGGCAACAGAAGGCTGAGCCTCAGCTAAAGAGGCTCAGCTGTGTCAG
ACTGAAGTTACTTATTTGGGATATACCCTTTGAGATGGGAAGCAGTGGCT
AAAGAAAGCCAGAATAAAGACTGTAACTCAGATCCCCACCCCAACTACAC
CAAGGCAAGTAAGAGAATTCTTGAGTACTGCTGGCTTCTACAGACTCTAG
ATACCTGGGTTGGCGACCTTAGCTGCCCTGTTGTACCCCCTAACCAAGGA
AGTGGAGGTGTTTGTGTGGACCCCATATCATCAGAAAGCCTTTGAAAAAA
TTAAAAAGGCCCTACTGATGATGGCCAGCCTTGGCCTTTGCCTGAACCTA
ACCAAACCTTTTCCTCTATGTAAAAAAAAAGATCAGGGGGCCGCCCCAAA
AAACCCTTAATTCAAACTTTGGGACTTTTTAAAAAAGACCGGGGGGTTTT
CTTTCCCCGGAAAGTTTAACCCGGTTTTCCCCCCAGGGGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_a24.b1 MSMg01no130_a24.b1 CHROMAT_FILE:
MSMg01no130_a24.b1 PHD_FILE: MSMg01no130_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:41 2005
         (311 letters)



>mm_chr7_27621072_27621782
          Length = 711

 Score =  507 bits (262), Expect = e-148
 Identities = 304/328 (92%), Gaps = 17/328 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcttcggtgattgctttctctcttcctctcccttgctttctactatca---at------ 51
           ||||| ||||||||||||||||| ||||||||||||||||||||| |||   ||      
Sbjct: 184 agctttggtgattgctttctctcatcctctcccttgctttctactgtcagacatggcagg 243

                                                                       
Query: 52  --------tcccaggaactgtctcccagcaacaatgtctcctctctccagactctctttg 103
                   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 acctttgttcccaggaactgtctcccagcaacaatgtctcctctctccagactctctttg 303

                                                                       
Query: 104 ggtctctctctttatttccgtctcttttgttgctcaattatacatctttctcaacaataa 163
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ggtctctctctttatttccgtctcttttgttgctcaattatacatctttctcaacaataa 363

                                                                       
Query: 164 tcgccaccagatctcttcagtctcctgtctctcgcctctgtctctgcccttctgtctccc 223
           |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 364 tcgccaccagatctcttcagtctcctgtctctcgcctctgtctctgtccatctgtctccc 423

                                                                       
Query: 224 tcttcttactgtcctgttactcgctctcttttatctatagttttcttggtgccttcttgt 283
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 424 tcttcttactgtcctgttactcgctctcttttatctgtagttttcttggtgccttcttgt 483

                                       
Query: 284 gttttgcatttccatttctaatgatctg 311
           ||||||||||| ||||||||||||||||
Sbjct: 484 gttttgcatttgcatttctaatgatctg 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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