BAC Information

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BAC

Clone NameMSMg01-130C03
Chromosome7 (Build37)
Map Location 121,960,841 - 121,961,075
singlet/doubletsinglet
Overlap geneInsc
Upstream geneSpon1, Rras2, LOC668451, Copb1, Psma1, 4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb
Downstream geneEG627967, LOC668472, Sox6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130C03.T7 (MSMg01no130_c03.b1)MSMg01-130C03.TJ (MSMg01no130_c03.g1)
ACCAG337964AG337965
length703713
length of high quality
(start - end)
234 (75 - 308)70 (133 - 202)
definitionCHROMAT_FILE: MSMg01no130_c03.b1 PHD_FILE: MSMg01no130_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:47 2005CHROMAT_FILE: MSMg01no130_c03.g1 PHD_FILE: MSMg01no130_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCATAATTTGCGGCGCTAAACGACTCCTATAGGTCGAGAATGCGCGGA
ATTCAGCTGCCCTGTTCCCAGGATGGGACTGAACCCAGCGTCTCAGAGCC
ACAGTCAGCTCTGACTGGAGTATGTCCGAGAGGGGAAAACCTTGACCCAG
TCTTCTCTGAAGAGTGTGACTCATTCCTTTCCCTTACAGTCTAACTTCAG
TCTGTCTCCCGGGTAGGAGCAGAGAGGATTAAGGCTTGAAAGGGTGGAAT
CAAACCCCCACCCCACCCCCATTCCCATCCCGTGCACTTTCCCTCTGCTT
TTACTAGGATTTCACTGACATGTTGTTTCATTACTGACCACAGCGTCAGT
TGGCAGCTGTAGCTTCTCTGTCCCTCGGCTCCCACCCGTTCTTGTTCTAT
TGTACCTGTCTGGTATCCTGCCCCACCTTTGTGATTCTTACTGGGGTTCT
GTGGGACACCATGTGCTGCGTAACAGCTCCCTTTGGCGGACATGAGTTCC
ACTGCTCGTTCTGCCAGGTTCTCTAGTGCCACAATTTTCTGCAAGTGCTG
TGGCTATTGGGTTACCGCCCCCTCTATCACTTGTTCGGACCCCCAAATTT
CCCCTGATATCTACTAGGAGGCCGCGGAATGCTTAAAACTCAAGATCACA
CACTTTCTCCTATTGGATATTATTTTTCTTTTTCAACCACGTCATACGAC
TCG
CCGATGCTAGCGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCCAAATACAGGCCACTGTGCCTTCTACACTCCCA
AGACTCACCCACCAAGACTGTTTATCTCCAGCTTTTTTCTGCCAATGCCT
TTTCTCCCTTCCATCCATGCCAGCCATTCTAGTTTGGGGTTCCCAGCTGA
AGGCAGGGTATGGATTGTTTGAAAAGACATATGGCATCCCAGGGCAGCTG
AGAGTCCATCGTAAGGGGAAACCATTGTCCATTCATCTGGACCGAGTGAC
ATTCCTTATGCTACAATAACTCTTGATTACTGGGCGAGCTTTAACGTATA
CCACTTAGGCTATTTCTTTTTTCTGCCCCCCCCGATCAAATGAGCTGTCA
CGCTGTACCTGATACACTGACCTCACCAAAAAAAAAATATTATTCCTTAG
CCGTTACACTCCCATATGGCACTGCGTGCCGTCATCGCCTGTAGCACACT
TGCTCAATTACACACCAACTCATGCACCTGATATTTACTTATTGTCTCCA
TATCACACGACCCTCGGGCAACGCTAAAGCCGAGCTTCCTTTGTTTGCGA
CAATCCAACCTGTACTTCTTCTTGCCCTAACGTGAAATACACAAGAATAT
AATATCGTATAGGCTACCATTAACTTTTACTCAATCCTCCTACCCACTCT
CATGCCCCTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_c03.b1 MSMg01no130_c03.b1 CHROMAT_FILE:
MSMg01no130_c03.b1 PHD_FILE: MSMg01no130_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:47 2005
         (234 letters)



>mm_chr7_121960641_121961275
          Length = 635

 Score =  408 bits (211), Expect = e-118
 Identities = 229/235 (97%), Gaps = 1/235 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggactgaacccagcgtctcagagccacagtcagctctgactggagtatgtccgaga-gg 59
           |||||||||||||||||||||||||||||||||||||||||||||| ||| | |||| ||
Sbjct: 201 gggactgaacccagcgtctcagagccacagtcagctctgactggagcatggcagagaagg 260

                                                                       
Query: 60  ggaaaaccttgacccagtcttctctgaagagtgtgactcattcctttcccttacagtcta 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaaaccttgacccagtcttctctgaagagtgtgactcattcctttcccttacagtcta 320

                                                                       
Query: 120 acttcagtctgtctcccgggtaggagcagagaggattaaggcttgaaagggtggaatcaa 179
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttcagtctgtctcctgggtaggagcagagaggattaaggcttgaaagggtggaatcaa 380

                                                                  
Query: 180 acccccaccccacccccattcccatcccgtgcactttccctctgcttttactagg 234
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 acccccaccccacccccattcccatcccgtgtactttccctctgcttttactagg 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 635
Length adjustment: 9
Effective length of query: 225
Effective length of database: 626
Effective search space:   140850
Effective search space used:   140850
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)