BAC Information

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BAC

Clone NameMSMg01-130F24
Chromosome7 (Build37)
Map Location 64,256,053 - 64,256,341
singlet/doubletsinglet
Overlap geneGabrg3
Upstream geneNipa1, LOC672959, Herc2, p, LOC100040839
Downstream geneGabra5, Gabrb3, EG668807, LOC434189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130F24.T7 (MSMg01no130_f24.b1)MSMg01-130F24.TJ (MSMg01no130_f24.g1)
ACCAG338144AG338145
length710719
length of high quality
(start - end)
291 (66 - 356)290 (68 - 357)
definitionCHROMAT_FILE: MSMg01no130_f24.b1 PHD_FILE: MSMg01no130_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:08 2005CHROMAT_FILE: MSMg01no130_f24.g1 PHD_FILE: MSMg01no130_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAAAGCCGCGGAATTCTCT
AGATTCTCTTAGAATCTTCCCCATCCTCATTAGGCCTGTTTATAGACCCA
CCCCTTTCATTTTTCTCTTTGGAGGTTTGAGGGAGTTGGACTGTGTTTGG
CTGCCCTTCATCCACAAAGCATTTATCTGTCTTTCTGGCCTGCATGTCTT
GTATATGACTGATGCAATTTGTCCCCAGTGACCCCACCATCTCTTCAGTT
ACTGTCTGTGGTTTCTGAAGTTTAGCACATTGTGTAGTATGGTAAATGGT
GATGAACCGGATGGTGCATTTTTAGGATTAGAGGAGCCAGGGAAACTGTG
ATGATTCTGTACCTCACGCACACACACACACACACACACACACACACACA
TACACACAGATCACAGATCACACAGACACACGCACATCTGTGTGATATGA
AAAGAAGACTGCAGCCCCTGAAGAGTGATGCTGAAACTCAGGCCATGGAA
GATTTGAAGAAATAACACTGAAAATCAATGTCAGTTATTTTCCACCCGTG
ATAAGAAGAAATAGAAGGGCTTTATCTAATTTTATCTACACATTTTCAGA
TTAGTGATGGCAACCATATTTGACGGGCAGGTGTCTGTGATTACTTTTTT
TTTTTTTTTGCTTTTAAAGAAAAAAAAATATACATTAGGTATTTTCTTCA
TTTACATTTC
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCAGAAATTCATTTTGAGATATTTCTTGCCCCACTCTTCTTT
TCTTCTTTTGAGAACTCTCTTCAGATCCCAAGCCCATTTTTGAATGGGTC
ATTTGTTTTGTTGACATTGGATTTTTTATTTCCTTATATATTCTAGATAT
TAATCCATTGTTGTATTTATAGCCGGGAAAGATTTATTTCCATTGTGGAG
GCTTCTGCTTCACTTCACTTTGTTTTTTGGCTATGCACATACTTTTTAGT
TTTAGGAGGTGCCACACCATGTTATGTTTAACTTCATACTTTATATCGTT
TTGACTTTTTCTTTAACCTCGCCATTTTAGGAGTTGGCTTTACAAATTGT
AAAGTGTATTTCAACAATATTTTAATAATTTTAATATTTTAAAATTTGCT
TTAGTCTGATTATAGAATAACTTCCTCTTTTTTGTAATGACACACAGTAT
GTAAATTACTGCTATTAACTAAGACAAAATAGAAGTGGAAAAACTATCTT
TGCCAACAGATATGTAAACTGCAACAGTAGACAAGAAATAAAGAATAGCA
ACCTCTCAACTAGTACATTCTAAGGTACTAAAATGGGTAGAATTCCAGAT
GAAGGGTTGAAAGTTTAATTTAAAAGCTGATCAATAGCATCAGACCGACA
AAAAGGCTGACTAATAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_f24.b1 MSMg01no130_f24.b1 CHROMAT_FILE:
MSMg01no130_f24.b1 PHD_FILE: MSMg01no130_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:08 2005
         (291 letters)



>mm_chr7_64255853_64256543
          Length = 691

 Score =  536 bits (277), Expect = e-157
 Identities = 286/289 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttccccatcctcattaggcctgtttatagacccacccctttcatttttctctttggagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cttccccatcctcattaggcctgtttatagacccacccctttcatttttctctttggagg 430

                                                                       
Query: 61  tttgagggagttggactgtgtttggctgcccttcatccacaaagcatttatctgtctttc 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tttgagggagttggaatgtgtttggctgcccttcatccacaaagcatttatctgtctttc 370

                                                                       
Query: 121 tggcctgcatgtcttgtatatgactgatgcaatttgtccccagtgaccccaccatctctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 369 tggcctgcatgtcttgtatatgactgatgcaatttgtccccagtgaccccaccctctctt 310

                                                                       
Query: 181 cagttactgtctgtggtttctgaagtttagcacattgtgtagtatggtaaatggtgatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cagttactgtctgtggtttctgaagtttagcacattgtgtagtatggtaaatggtgatga 250

                                                            
Query: 241 accggatggtgcatttttaggattagaggagccagggaaactgtgatga 289
           ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 accagatggtgcatttttaggattagaggagccagggaaactgtgatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)