BAC Information

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BAC

Clone NameMSMg01-131I13
Chromosome7 (Build37)
Map Location 118,795,016 - 118,795,640
singlet/doubletsinglet
Overlap geneGalntl4
Upstream geneB430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9, Eif4g2, LOC100043221, LOC100042658, LOC384658
Downstream geneLOC668399, LOC100042678, Usp47, Dkk3, Mical2, Micalcl, Parva, LOC627808
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131I13.T7 (MSMg01no131_i13.b1)MSMg01-131I13.TJ (MSMg01no131_i13.g1)
ACCAG339013AG339014
length705713
length of high quality
(start - end)
625 (71 - 695)86 (227 - 312)
definitionCHROMAT_FILE: MSMg01no131_i13.b1 PHD_FILE: MSMg01no131_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:47 2005CHROMAT_FILE: MSMg01no131_i13.g1 PHD_FILE: MSMg01no131_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCATAATTTGCGGCGCTAAACGACTCACTTCCAAAGAGGGCCGCGGAA
TTCACATCTCCCTTATGCCTCTGTTTGCTCACAGTAGGCTGTTTCTACCC
ACACATGGTTGCCTGTGACCGTCACTTCCATAATATTGCTCATTGGTCCA
TACTGCTATGGGCCTTAACTGATATATCCCATGAGACTTGCACCCCAGAA
CCTAGCACATAGCAATAACTCAATAATTGGCTATGCCTAGTATTAAAATC
ATCAGTCTAGTCTTCCTTCCACATTTGTGCCATATTCATATTTCCTAGAA
CCCCTCCCACATTGCTGTATTGGTTTCAGAAACTTGTCTTTAATTTCTGG
GACAGACAGAGCAAGAGCTACACCTCTCTAGGGAGAAGTGCCACCATGGC
CAAGGACAAGGCATGTTTTGACCTTGAGTCCTGCAAGGGGGCTTTCCCTA
CAAAGAACAAAGAGGTGGATTTTCTTGTTTTCTGGGTAAGCTGACCTTTG
GACTTCTTCATCTCTATGAACAAACATGGCCTCTCAGGAGCCCATATGCT
GAGCTATACCATACTTAAAAGTGACTATGTCACCATTAGAAGGTCCCCAA
GTGGCTCCAGGAAAAAGGAAATTTGGATCAAATGGATCAGACTAGATCCA
CTACAAACTTTAAGCTAGGATAATGAATTCACCCAGGGACTTCAGAACAA
ATACC
AACGATACACTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTAGGTTAAGAGAAGTGTTCTAAG
ATTTACTGTGAGTATTTGTGTCTGAAAAAATGTGTGTGTGTGTGTGTGTG
TTTGTGTGTATGCACCTGCATGTATGTGGGCTTGGAACTCTTAGAGCCAG
TGTTACTGGCGTTGGTAGGACGCCCAGCTTGTAACACAGGTGTTCCCTCG
TGGGAGTACTGTCTCTCCAGCCCCAGGTGAAGTTTTAAATGTCCAGAACA
TTATGTACTCAAGAGATCTTTTTTTGAGAGCTTTGCCAAAGACTTGATAC
TGGGATTTTTTTTTTTACCCCCCCACCCCCAAAAGCATGACCCTGCATAA
GCTCAAGAATTTTAAAGAAAAAAAAAAAAAAACTGGAAAGGAGGGGGGAT
GTTTGTTCTTGTTTGAGTGCACATTCATGTGTGTGGCATGCTTGTTCTTG
TGCATACCTATGCGTCATTCGAAGAGGTATATAGAAGAAAAGATCGATCG
AGTCTGAGTGCACATCCTAAAGCCACTCTCTCATTATCATACTTTAAATA
TCCATGTTCACTTTTTGTAAAACCTTATTTTCTTTTGAACCTTGAATCCC
ATTCCCACTTTCTTTTTACATGCCAATTATACTTTGTTCTTTATACACCT
CCTTTATCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_i13.b1 MSMg01no131_i13.b1 CHROMAT_FILE:
MSMg01no131_i13.b1 PHD_FILE: MSMg01no131_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:47 2005
         (625 letters)



>mm_chr7_118794816_118795840
          Length = 1025

 Score = 1085 bits (561), Expect = 0.0
 Identities = 609/625 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtttgctcacagtaggctgtttctacccacacatggttgcctgtgaccgtcacttcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 825 ctgtttgctcacagtaggctgtttctacccacacatggttgcctgtgatagtcacttcca 766

                                                                       
Query: 61  taatattgctcattggtccatactgctatgggccttaactgatatatcccatgagacttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 taatattgctcattggtccatactgctatgggccttaactgatatatcccatgagacttg 706

                                                                       
Query: 121 caccccagaacctagcacatagcaataactcaataattggctatgcctagtattaaaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 caccccagaacctagcacatagcaataactcaataattggctatgcctagtattaaaatc 646

                                                                       
Query: 181 atcagtctagtcttccttccacatttgtgccatattcatatttcctagaacccctcccac 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 atcagtctagtcttcctcccacatttgtgccatattcatatttcctagaacccctcccac 586

                                                                       
Query: 241 attgctgtattggtttcagaaacttgtctttaatttctgggacagacagagcaagagcta 300
           ||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 585 attgcagtagtggtttcagaaacttgtctttaatttctgggacagactgagcaagagcta 526

                                                                       
Query: 301 cacctctctagggagaagtgccaccatggccaaggacaaggcatgttttgaccttgagtc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 525 cacctctctagggagaagtgccaccatggccaaggacaaggcatgttttgaccttgagac 466

                                                                       
Query: 361 ctgcaagggggctttccctacaaagaacaaagaggtggattttcttgttttctgggtaag 420
           |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||
Sbjct: 465 ctgcaagggggctttccctacaaagaacaaagaggcagatattcttgttttctgggtaag 406

                                                                       
Query: 421 ctgacctttggacttcttcatctctatgaacaaacatggcctctcaggagcccatatgct 480
           ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 405 ctgacctttggacttattcatctctatgaacaaacacggcctctcaggagcccatatgct 346

                                                                       
Query: 481 gagctataccatacttaaaagtgactatgtcaccattagaaggtccccaagtggctccag 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 345 gagctataccatacttaaaagtgactatgtcaccattagaaggtccccaagtggttccag 286

                                                                       
Query: 541 gaaaaaggaaatttggatcaaatggatcagactagatccactacaaactttaagctagga 600
           |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 285 gaaaaaggaagtttggatcaaatggatcagactggatccactacaaactttaagctagga 226

                                    
Query: 601 taatgaattcacccagggacttcag 625
            ||||||||||||||||||||||||
Sbjct: 225 caatgaattcacccagggacttcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)