BAC Information

Click to search

BAC

Clone NameMSMg01-132I08
Chromosome7 (Build37)
Map Location 152,490,600 - 152,490,914
singlet/doubletsinglet
Overlap geneMrgprf
Upstream geneShank2, Cttn, Ppfia1, Fadd, Tmem16a, LOC669079, LOC677315, Fgf3, Fgf4, Fgf15, Oraov1, Ccnd1, 1810010D01Rik, LOC100040049, Tpcn2
Downstream geneMrgprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132I08.T7 (MSMg01no132_i08.b1)MSMg01-132I08.TJ (MSMg01no132_i08.g1)
ACCAG339740AG339741
length706697
length of high quality
(start - end)
223 (385 - 607)315 (73 - 387)
definitionCHROMAT_FILE: MSMg01no132_i08.b1 PHD_FILE: MSMg01no132_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:03 2005CHROMAT_FILE: MSMg01no132_i08.g1 PHD_FILE: MSMg01no132_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAGGGCGCGGAA
NTCCACTTCTCTGGCAGCACGGACTCAGCACTATGAAGGGCTTACCTTGC
AAGCATGAAGACCTGACATACCGCCCATGTAAGCCAAGTAAGGTCTAGTA
CTACAGTGGCAGACATAGGAAGGTCCCTGGGGATTGCTGGCCAGCCAGCT
TAGCCTGCTCAATTCATCCAGGCCAATTAGAGACCTTGTCTTAATAAAGC
ATGTGTTTATGCTGTACACCGTGCACATGTACAAACACACACACACACAC
ACACACACACACGAACAAAAATTAGTCGTTTTTACTTAATTTGTTTTCTT
TTTTTCTTTTTCTTTTCTCCCCCCTTTTTGCTTGGTGGTTTTTTTGTTTT
TGTTTGTTTGTTTGTTTGTTTGTCCAGACAGTGTGACAATGTTTCTCTGT
GTAGCCCTGGTTGTCCTAGAACTCACTCTATAGACCAGGCTGGTCTTGAA
CTCAGAAATCTGCCTGCCTCTGCCTCCCAAGCGCTGGGATTAAAGGTGCG
CACCTCCATGCCTGACTGATTTACTTATTTTTTTATCACATAGGAATGTC
TCTTTAGCTTCATGGTCTTCTGCTATTAGTGGCTACGTCTGGGATACCTG
GCCTGCCCTTATTTATTGTGCCTGAAATAGCCCCTGCACTTTTTTGCTGG
AGAGGC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTGGCTAACATCTTTTGTCCACCCCTA
AACCAAGCTGCCTAGCTCTTTCTCTGCTCCCCTTTCCTGGAGCTGCTCTG
TTGCTGCCCCAGGCCTCTGACTCACTGGACCAGACCCAGATGCAGAACTT
TGTCCTTTGTGGACCAGCTCAGCAGTAGAAGCTGGCCTGCTGGGACTGGG
CAAAGCCCTTTGTGTATCACCTAGCTAGAAAAGTCTGCAGTCCCTCAATG
GGTGTTGGTAGCCTGGGTGGTGGAGTGGGGGTGGGCTGGGGCTGGGAGAC
AGGCATGAGGGATGGGAGGGACTGGTGAGGTTCTGGGCAGGAGTTACTAT
TTGCAGTCCCACACTACATTGTGAATCACCTCTCCAGAGTCCGCTCCCAT
CCAGGGCCTTGTCTTCCCTAGGGACTCTGTGTTGCCTTCCTAGCACGCCC
AGTCCCTGACTCCAGGATACATCACTGTATGAGCCTTATTTATCCCAGTC
TAGCTTCAGCCGTTAATGAGTAACTATTGCAGAGGGTCTCCCTACTTTAT
CAGCTACTCCACTCTTTCCCCGGTCACATAATCCATGCTTGTTTCCTAAC
TATGATTTTTTATCCCTTACGTACTGAACTATCCCTTTTTCGCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_i08.g1 MSMg01no132_i08.g1 CHROMAT_FILE:
MSMg01no132_i08.g1 PHD_FILE: MSMg01no132_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:03 2005
         (315 letters)



>mm_chr7_152490400_152491114
          Length = 715

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attggctaacatcttttgtccacccctaaaccaagctgcctagctctttctctgctcccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 attggctaacatcttttgtccacccctaaaccaagctgcctagctctttctctgctcccc 456

                                                                       
Query: 61  tttcctggagctgctctgttgctgccccaggcctctgactcactggaccagacccagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tttcctggagctgctctgttgctgccccaggcctctgactcactggaccagacccagatg 396

                                                                       
Query: 121 cagaactttgtcctttgtggaccagctcagcagtagaagctggcctgctgggactgggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cagaactttgtcctttgtggaccagctcagcagtagaagctggcctgctgggactgggca 336

                                                                       
Query: 181 aagccctttgtgtatcacctagctagaaaagtctgcagtccctcaatgggtgttggtagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aagccctttgtgtatcacctagctagaaaagtctgcagtccctcaatgggtgttggtagc 276

                                                                       
Query: 241 ctgggtggtggagtgggggtgggctggggctgggagacaggcatgagggatgggagggac 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ctgggtgggggagtgggggtgggctggggctgggagacaggcatgagggatgggagggac 216

                          
Query: 301 tggtgaggttctggg 315
           |||||||||||||||
Sbjct: 215 tggtgaggttctggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)