BAC Information

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BAC

Clone NameMSMg01-133G12
Chromosome7 (Build37)
Map Location 34,947,184 - 34,947,512
singlet/doubletsinglet
Overlap geneSae2
Upstream geneEG546954, LOC100043856, LOC100043857, EG545947, EG434676, EG668431, Abpd, EG545948, LOC435963, LOC435962, EG626970, LOC100043859, LOC627004, LOC100043398, LOC100043401, Scgb2b1, LOC668440, Abpz, LOC100043860, LOC627079, LOC635803, Abpg, LOC100043864, LOC100043865, Abpb, Abpa, LOC100043866, LOC100043867, LOC100043868, Wtip
Downstream geneLOC100043410, Pdcd2l, Gpi1, 4931406P16Rik, EG619734, Lsm14a, LOC668460, LOC668464, Kctd15, Chst8, Pepd, Cebpg, Cebpa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133G12.T7 (MSMg01no133_g12.b1)MSMg01-133G12.TJ (MSMg01no133_g12.g1)
ACCAG340395AG340396
length686706
length of high quality
(start - end)
237 (120 - 356)553 (77 - 629)
definitionCHROMAT_FILE: MSMg01no133_g12.b1 PHD_FILE: MSMg01no133_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:13 2005CHROMAT_FILE: MSMg01no133_g12.g1 PHD_FILE: MSMg01no133_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATTTGCGGCGCTATACGACTCCTATATCGAGAGATCCGCGGAATTCCA
CAGGATACCATCATATTGGTTCACAGTATTGGGCAAATTCTTCAGCTAAA
GGCCTAGCCCTATTTCCATCAACGAGTTCACACTGGTAGAAAGCCACATG
GATATAGTTGGTTACCTAATGCTGCAGGATATTCTAACACTAATTTGGGA
GCCCTCCCATATGGTTTCCCATAGAGAACAGAGTCTGCACATAAGACTCT
GAGTGGCCCTGCCCCCCAACTAATTGTAACTGGCAAATGAAGATGACAAC
AGCTAATAGTTGGGCATAAAAGGCAGAGGTGGGGGTTGAGGTTTTCTGTG
TTTGTATCCATGACGAACAACATTACAGGAGAGGAGAAGGGAGAAGCCAC
CATGGATTTGCTGAGCCATAAAAATATGGCCCCGGGACATGTGTGCACCC
TCTGCCTCATTCACTCCTGCTGCCTCCTCCTGCTGCCCCTGGTGCTGCTT
GTGTGCTCCTTCAGAGGAGACCTGCTGCCTCTTTTGTGAAGCAGCAGCTG
AGGGGACTCCTGTGCTCCCATGGCCGACGAAAAACCCAAGAAAGGAGTCA
AGACTGAGGGGGGGGAAGGGGGCTGGGTTTGGGGGTTTTCTCTTCTTTCA
TCTCCTCTCCTCTTTCTCATCACCCTTTTATACCAC
ATGATNGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAGGATTCTTGGACTGTGCTC
CATCTTCTGTCCCTCATCCACCAAGGATTACTTAATAGAAGCAAGCGTAG
TAGCATGTTACAGAATGCATGGAAATGGTTTGTGCAGCTCACACCTTCTT
AATGCTTTTTTTTTTTTTTTTTTTTAATTTGGCTTTTCGAAACAAGGTTT
CTCTATAGCCCTGGCTGTCATGGAACTCGCTTTGTAAACCAGACTGGCCT
CTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGACTTT
CTTAATGCTTTTTATGGTTTCCTTTACATACATACATATATACATTTATG
TGAATGGGTGTGTTATTTGCATGTATGTCTGTAATGTGTGCTGCCCCAGT
GCTCAAAAGATTCCAAAAGAGAAGGCCAGATCCCCTACACTGGATTTACA
GGCAGTTTTGAGCCAACTTATAGGTGCTGGGAACTGAACTCTGAATTTTC
TGGCTGGAACAACAACCAGTACTCTTAACTGCTGAGCCATCTCTCCAACC
CCACTTTAGATCTTGTACCTTGAGTCATACCCAAGGCCATACACATACCA
GACAGGTTGCACTCACAGTCCAGCACTTGGGTATTATTTCTAGAAGTCTT
TCTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_g12.g1 MSMg01no133_g12.g1 CHROMAT_FILE:
MSMg01no133_g12.g1 PHD_FILE: MSMg01no133_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:13 2005
         (553 letters)



>mm_chr7_34947184_34948136
          Length = 953

 Score =  582 bits (301), Expect = e-170
 Identities = 323/331 (97%), Gaps = 2/331 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaaggattcttggactgtgctccatcttctgtccctcatccaccaaggattacttaat 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cagaaggattcctggactgtgctccatcttctgtccctcatccaccaaggattacttaat 270

                                                                       
Query: 61  agaagcaagcgtagtagcatgttacagaatgcatggaaatggtttgtgcagctcacacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 agaagcaagcgtagtagcatgttacagaatgcatggaaatggtttgtgcagctcacacct 210

                                                                       
Query: 121 tcttaatgcttttttttttttttttttttaatttggcttttcgaaacaaggtttctctat 180
           |||||||||   |||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 209 tcttaatgc--ctttttttttttttttttaatttggtttttcgagacaaggtttctctat 152

                                                                       
Query: 181 agccctggctgtcatggaactcgctttgtaaaccagactggcctctgcctcccgagtgct 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 151 agccctggctgtcatggaactcgctttgtagaccagactggcctctgcctcccgagtgct 92

                                                                       
Query: 241 gggattaaaggcgtgcgccaccacgcccgactttcttaatgctttttatggtttccttta 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  gggattaaaggcctgcgccaccacgcccgactttcttaatgctttttatggtttccttta 32

                                          
Query: 301 catacatacatatatacatttatgtgaatgg 331
           |||||||||||||||||||||||||||||||
Sbjct: 31  catacatacatatatacatttatgtgaatgg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)