BAC Information

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BAC

Clone NameMSMg01-133J18
Chromosome7 (Build37)
Map Location 59,721,565 - 59,721,868
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem16e, Slc17a6, EG620599, LOC654473, LOC100040608, Gas2, 1700015G11Rik, EG668783
Downstream geneEG620782, LOC100040692, Gm1865, LOC100040718
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133J18.T7 (MSMg01no133_j18.b1)MSMg01-133J18.TJ (MSMg01no133_j18.g1)
ACCAG340542AG340543
length715712
length of high quality
(start - end)
312 (38 - 349)390 (74 - 463)
definitionCHROMAT_FILE: MSMg01no133_j18.b1 PHD_FILE: MSMg01no133_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:27 2005CHROMAT_FILE: MSMg01no133_j18.g1 PHD_FILE: MSMg01no133_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCGCGGAATTCT
TGAAGAACAAAGTTGAAAAAAAGCCAAGCAGAGACATGAGAGAGAAAATG
GTAAAGGTAAACAACACATCCGAAGCTGAAACCCAAACCTACAGCAGCTA
TTAAGAGTAGTTCACCTGCTAGCCTGCTTAACGGGAATCTGGGAACTGCA
GTGGCTGAAACCCTGATTGTTCATTCCTTTCAACAGAAAATGCTCATGAG
ACCTACAGCCATAGACAGGACATGGAGGAAGGAGGGGCAGAGATTTAGAA
AGAGCAAGCACGTATTAAGGAACAGCCAAGGAGGAAGGAAAGGAACAAGA
TGATGATTTCCACGGACAGACCACAGGTCAAGCAGAAAGAAAATGAGAAG
ATAGAGGAGAGAAGGAAGAGAGAAAGACCAATGAGGTGGAGGGCTGCCAT
CAAAATATGCTTAACTAGACATGGGGATCGTTGGCGTTCTAGGTGAAGCG
AACAGCTTCATCACGGAAGGGGGACCGAGATGTCAAAGGGGAGTTGTAAA
TCTTAAAAGATTTCATTGTGGAAAGCAGAGCTGGGGGCGCAGAATGACGG
AGGACAGATTGAGGTTCTGAACTTCGCCATTTGCTCACAGGCTGATCTTA
ACTGTCTTGACTAACCCAGTGAGATAACATCCCGCAGGCATCTTGATTAC
TCGATGGTGCTGCAT
TCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCCTTTCTCTTTGGTTAGTGGATACAA
GGGAGCTGACAGTGTGGCAAATCCGGGAATCCAGAGTCTGCAAAACCCGG
CGGTCCCCAGGAACTCTCTTACCTGGCGAGCAGTGATTGGGGTCGGGATC
TGCATAACAGCTTGTTTTCTGGCTTCTGTGAGCCACCGTTGTCCATCTCT
CAAGACATATCCTAGGTAGGTCACTTCTATCTGGCATAACTGAGCCTTTT
TAGCAGAGGCCCGATACCCCAGCTTACCTAACTCGCCCAGGAGGTTTTGG
GTCCCAATTTCACAGTCCTCGCGTGTTTCTGCAGCTAGGAGCAGGTCATC
TACATATTGCAGAAGAGTCACCTGTGGGTTATTGGCTCGGAAAAGAGCAA
GATCTCGGTATAGGGTTTCATCGAACAAAGTGGGCGAGTTCTTGAATCCC
TGAGGCAGCCTCGTCCATGTGAGCTGTCCAGCTTGTCCACTCTCGGAGTC
TCGCCATTCGAAAGCGAACAAGGGCTGGCTGTCGGCGTGTAACCTCACAC
AGAACACAGCGTCTTTTGAGATCTAGCACTGCGTACCTTGTCCGACCAGG
TGGCCAGGTGTTGACGAGGTCATTACGACTCGGCCCCGCGTGGTGTACGT
CTTGAACTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_j18.b1 MSMg01no133_j18.b1 CHROMAT_FILE:
MSMg01no133_j18.b1 PHD_FILE: MSMg01no133_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:27 2005
         (312 letters)



>mm_chr7_59721360_59722072
          Length = 713

 Score =  518 bits (268), Expect = e-151
 Identities = 295/304 (97%), Gaps = 1/304 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattcttgaagaa-caaagttgaaaaaaagccaagcagagacatgagagagaaaatgg 64
           |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggaattctcgaagaagcaaagttgaaaaaaagccaagcagagacatgagagagaaaatgg 450

                                                                       
Query: 65  taaaggtaaacaacacatccgaagctgaaacccaaacctacagcagctattaagagtagt 124
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 taaaggtaaacaataaatccgaagctgaaacccaaacctacagcagctattaagagtagt 390

                                                                       
Query: 125 tcacctgctagcctgcttaacgggaatctgggaactgcagtggctgaaaccctgattgtt 184
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 389 tcacctgctagcctgcttaacaggaatctgggaactgcagtggctgaaaccctggttgtt 330

                                                                       
Query: 185 cattcctttcaacagaaaatgctcatgagacctacagccatagacaggacatggaggaag 244
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 329 cattcctttcaacagaaaatgctcatgagacctacagccacagacaggacatggaggaag 270

                                                                       
Query: 245 gaggggcagagatttagaaagagcaagcacgtattaaggaacagccaaggaggaaggaaa 304
           ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 269 gaggggcagagatttagaaagagcaagcacgtagtaaggaacagccaaagaggaaggaaa 210

               
Query: 305 ggaa 308
           ||||
Sbjct: 209 ggaa 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 713
Length adjustment: 9
Effective length of query: 303
Effective length of database: 704
Effective search space:   213312
Effective search space used:   213312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)