BAC Information

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BAC

Clone NameMSMg01-133K09
Chromosome7 (Build37)
Map Location 19,541,602 - 19,542,130
singlet/doubletsinglet
Overlap geneNova2
Upstream geneCeacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik
Downstream geneNanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133K09.T7 (MSMg01no133_k09.b1)MSMg01-133K09.TJ (MSMg01no133_k09.g1)
ACCAG340569AG340570
length692691
length of high quality
(start - end)		534 (39 - 572)533 (69 - 601)
definitionCHROMAT_FILE: MSMg01no133_k09.b1 PHD_FILE: MSMg01no133_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:30 2005CHROMAT_FILE: MSMg01no133_k09.g1 PHD_FILE: MSMg01no133_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGATCCGCGGAATTCT
AGGATTTCCTACTATTCCTGCTAGCAGTCACCCCAAGTCCTATCTCCCAT
CTCTGGCATCCACTAACCTACTTTTCCTTTGATGTGAGGTGAGAAGCATG
GGAAGGCCATAGCAGAAAAAGTGGTACCCCCCCCCCCATTGCTCTCCGTT
TCACTGACTTTAGGATGTCTTACCAAAGCCAGCAGCTCAGTGGCTAGGAC
GACTGTCCAGAAAGCTCCTGGGGTCTGTCAGTTGGCCTCAGTGCTAGGAT
TACAGCACATATAGCCATGTCTGGCTTTTTACGTAAGTGCTGGAAATTCA
AACATAGCTCCTTCGGCCCAGACAGTTGGCTCAGCTCTTCAGAGCTCGTC
TCTGTTCTGAAGGACTTGGGTTCAGTTCCTGGCACCCGCCTGGCATCTAT
CAGCTGCCTCCAACTCCAGTTCGATATCCCAGTACTAGAAAGTAATGATG
TTATCACAGTTCACACCCAAACTCCACAAAGCAATAAAGCTATGGTCCAG
AGTGATTCCCCAGACTATTTTTGGTTTGGAGCTTTTTTTAAAAAAAAAAA
AAAATAAGTCTTACAGTGTAGGCCAGGCTAGCCCAGAACTCATTGTGTCG
TGCAGTCTGGTCTTGAACTTAAAATCTTCCAGCCTCCTCCTG

ATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTATGTAGATGAGGCTAGCCTTGAATTCAGA
GAGCCACCTGCCTCTGCCTCCTGAGTGCTGAGATTGAGGACATGCGACAC
CATGATTGGCCCTGAATCTGCTTGGTGTGGTTGGATGGAAAGAAGAAAAA
GCTAGTTTTTTCAAGTGTCAAACCAGCCTGTGCTGAAATACAGCTATACC
AGAAAATGATCTCTGGGGATTAGGAAAGTCCTAGCTACCTTTTGTGAACA
TGCTGTTTATTGTGAGACAAGGTCTCTTGTATCCATGGCACCCTTCAACT
CAGGTACATAGCCCAAGGGTGAACTTGAACTTCCAACCCTCCTGTTCTAT
GTCCTAAGTGCTTGGCTTGCAGATATGTGCTACCACAGCAAGTCAGTGTG
GTGCTGGCCGCTGACGTCAGTCCTTAGTGCATCCTAGCTAAGCATTCTAC
CACTATGTTGTGTCCCCAGTGCTGGAAATCAATCTCATGGCCTTTTGCAT
ATTGGGCAGTCTTCCTATCACTTAGCTATGCCCCCAGGCCCTCACAAGAG
GATTCTAGGCAACTTGCTTTACCACTGAGCTACTTTCAAATTGGATTTTG
AGGGATATAGGGATGTTAGGACGAGATTTCCTAGCTGGGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_k09.b1 MSMg01no133_k09.b1 CHROMAT_FILE:
MSMg01no133_k09.b1 PHD_FILE: MSMg01no133_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:30 2005
         (534 letters)



>mm_chr7_19541397_19542330
          Length = 934

 Score =  920 bits (476), Expect = 0.0
 Identities = 516/534 (96%), Gaps = 10/534 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctaggat-ttcctactattcctgctagcagtcaccccaagtcctatctcccatct 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctaggatatttctactattcctgctagcagtcaccccaagtcctatctcccatct 265

                                                                       
Query: 65  ctggcatccactaacctacttttcctttgatgtgaggtgagaagcatgggaaggccatag 124
           |||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 266 ctggcagccactaatctacttttcctttgatgtgaggtgagaagcatgcgaaggccatag 325

                                                                       
Query: 125 cagaaaaagtggtaccccc----ccccccattgctctccgtttcactgactttaggatgt 180
           |||||||||||||||||||    |||||||||||||||||||||||||||||||||||||
Sbjct: 326 cagaaaaagtggtacccccccctccccccattgctctccgtttcactgactttaggatgt 385

                                                                       
Query: 181 cttaccaaagccagcagctcagtggctaggacgactgtccagaaagctcctggggtctgt 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 386 cttaccaaagccagcagctcagaggctaggacgactgtccagaaagctcctggggtctgt 445

                                                                       
Query: 241 cagttggcctcagtgctaggattacagcacatatagccatgtctggctttttacgtaagt 300
           |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 446 cagtcggcctcagtgctaggattacagcacatatagctatgtctggctttttacgtaagt 505

                                                                       
Query: 301 gctggaaattcaaacatagctccttcggcccagacagttggctcagctcttcagagctcg 360
           ||||||||||||||||||||||||||||||||||||||||||||     |||||||||||
Sbjct: 506 gctggaaattcaaacatagctccttcggcccagacagttggctc-----ttcagagctcg 560

                                                                       
Query: 361 tctctgttctgaaggacttgggttcagttcctggcacccgcctggcatctatcagctgcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctctgttctgaaggacttgggttcagttcctggcacccgcctggcatctatcagctgcc 620

                                                                       
Query: 421 tccaactccagttcgatatcccagtactagaaagtaatgatgttatcacagttcacaccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccaactccagttcgatatcccagtactagaaagtaatgatgttatcacagttcacaccc 680

                                                                 
Query: 481 aaactccacaaagcaataaagctatggtccagagtgattccccagactattttt 534
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agactccacaaagcaataaagctatggtccagagtgattccccagactattttt 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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