BAC Information

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BAC

Clone NameMSMg01-134A05
Chromosome7 (Build37)
Map Location 105,773,788 - 105,925,052
singlet/doubletdoublet
Overlap gene2210018M11Rik, LOC100040769, Prkrir
Upstream geneRsf1, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik
Downstream geneWnt11, LOC666978, Uvrag, EG666529, Dgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1, Olfr520, Olfr521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134A05.T7 (MSMg01no134_a05.b1)MSMg01-134A05.TJ (MSMg01no134_a05.g1)
ACCAG340835AG340836
length1,2091,238
length of high quality
(start - end)		714 (91 - 804)768 (93 - 860)
definitionCHROMAT_FILE: MSMg01no134_a05.b1 PHD_FILE: MSMg01no134_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:00 2005CHROMAT_FILE: MSMg01no134_a05.g1 PHD_FILE: MSMg01no134_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,773,788 - 105,774,501)(105,924,288 - 105,925,052)
sequence
NCCCCTCCTTTTNNNTACAGTGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCCTGAGGAAGCTGAGTACCTTTAGAAACCAAACTGGCAA
GCAGTGAGCTCAACTGAGACTCTCTACCTCAGCCTACAAGGTGAAGAAAG
ATCATGGACAGCAGCAGCAACCTCTGGCCTCCATGTGCACTTGTACACAT
GTGCATAGAAACCTTCACACATTTACACGTTCCTGCATGTGAACATATAC
ACGGCCACCACATACATACATTTAAAAATTCTCTTATACAAACATAAAAA
CCGAAACCAATGTTGTATGAAGAAGAATTATATACCATGACCAAGTAGGG
CTTATTTCTTTTTTTTTGTTTTTTGTTTTTATTGTTGTTGTTTTTGTTTT
TTCGAGACAGGTTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCT
GTAGACCAGGCTGGCCTCGATCTCAAGAGATCCGCCTGCCTCTGCCTCCC
AAGTGCTGGGATCAAAGGCGTGCACCACCACGCCCGACCACGCCCAGCCT
GGCTTATTTCATATATGTGAATAGCTCAACAGAAAATGAACTCATATGAT
TCAGCATATCAGCAGCTAAATACAAAAAAGGTATTAGATCACATCACTTG
AACATAGAAGAACATCTGACAGAACCTAACACAAAGTCATAATGAAAAGC
CACAGGAAAGAAGAAATGTCCTATTTCAACTCAAATCCTGTAACAGGCTT
CACACTCAACACTGAGCCCAATGCCTTCTATCCAAAACCAGGATGTAGGC
AAGAAAGTCTTTGATTCCCTTTTACTTATTATATATTCTAGCTAGTGAAA
AAAAACAGAGGGGGTAAAAAAAAAAAGCAGTTGGGGGAGAAAAATTGATT
GGTAAAAAAGAAAAAAAATGTCCTCCTTTTCTGATGACATAATTGAATAC
ACCTTATATTTCTTGGAAAGCCTAAGAAAACCATGTTGAATACCCCCCTC
ACTATAATAATTTAACCAAGCTTGAAAAAAAAAAAAATTCCGCAACATGT
TTTTCCCACCCAACAAATAACCTATTGTGAAATGGGAAATTTAAAAACCC
CCCCCCTTTTTAAAGTCCCTTTTTTAAAAAAATCACTTTAAGGCGTTATA
GCTTTTAAAAACAATTTTATAGGACATTTTCCTACCTGTGGAACCTATAA
AAAAACAAG

NCCGTCTCTTTTTNNACACAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAGTCCGGGGCACAT
AGTCTGTCTAAACCTCCTTTCCCTATGGAGAAGACTGAGAGACTCCACAT
CAAGGAGAGCCTTCCTCAGGCCATTTGCACATCAGAGAGCAATCAAGAGT
GGAGACAAGCATGGTAACTTTGGAGTCACCTTCCTGGGTTCAAATCTCAG
CTACGCAAACTCGGCCATGGACGCAAGCCCATGTTACAGACGTGGACAGA
ATGATCACTGCAGAGAGTGGGTGAGATTCTCCAGTGTGAACATCTCTAGC
ACGTTAGGGTCAGGCTGGGACAACGACTAGTTGTCTTCCCATAGAGCTTA
GTGCTTAGAGAAGGACACCTGCCTGACACTGCTCCTGACAGCCATGGCCA
GCCCAGCCTCAGTCTTCCATTATAAGTGTTTAGTGTTCGAAAGCTCCAAG
TCCCTGTGGAGTGCTACACTATGCCCTGTGCAGACCCTTCAGGCTGTCAG
AGGACAATGATTAGGTACCTAGCTTCCTAAAACCTCTTTGACAATCAAAA
CAAGCGGCATTTTCCCCCCACTTTGATGTGCATTGGTAAACACTGAGGTG
GGGCTTAGAATCAGACACACTTTCCCAACCCACTTTTGCCACTGAATGCC
GTCTCTATGGTTCCATTTTACCATGTGTAAAGTGGGGCTCACTATCCTCC
CTCACAGGGAGACATACACAGGCAGGCTTCCTCACCAGAGTTGGAGCTCA
GAAGTTGGAATTCCTCTGCTTCTTGGTGACTCAGGGACAACTGTAATGCT
CGCCCAGGCAGAATAGGTCCTGATGTGGCCAGGGGCCCCCAGAGACCACC
GTCAGTCTTGCTTTTCCTGAGAACCCGGGTGGCAGAGAAAAAAAACTGAA
GCTGGGGGTCAAAACTGGTGTTTTTACGTGATGGCCTTCCCCCTGGGCAG
GGGAGGGGGTAACCTTTTTTTTCCGAAAAGGACCCGGGGGGTAGAAAATT
AAGGGGGGAGTCTCCCTGTTTTTTTTGTGCGGGGCCGGGGGAGGCTCCTT
AAGGATCCCACCCTGAAAAGGGTTGGGAAGGTTCATTTTCAAATATAACC
CACAAGTTGTGTAATTTTTCTTTCCAAATTTATCCAGGAAGCCCCTTCAG
CTTCATCTTAATTTTGTCCCACCTCCGAAAAATCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_a05.b1 MSMg01no134_a05.b1 CHROMAT_FILE:
MSMg01no134_a05.b1 PHD_FILE: MSMg01no134_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:00 2005
         (714 letters)



>mm_chr7_105773588_105774701
          Length = 1114

 Score = 1328 bits (687), Expect = 0.0
 Identities = 708/715 (99%), Gaps = 2/715 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaactggcaagcagtgagctcaactgagactctctacctcagcctacaaggtgaagaaag 60
           ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 201 aaactggcaagcagtgagctcaactgagaatccctacctcagcctacaaggtgaagaaag 260

                                                                       
Query: 61  atcatggacagcagcagcaacctctggcctccatgtgcacttgtacacatgtgcatagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcatggacagcagcagcaacctctggcctccatgtgcacttgtacacatgtgcatagaa 320

                                                                       
Query: 121 accttcacacatttacacgttcctgcatgtgaacatatacacggccaccacatacataca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accttcacacatttacacgttcctgcatgtgaacatatacacggccaccacatacataca 380

                                                                       
Query: 181 tttaaaaattctcttatacaaacataaaaaccgaaaccaatgttgtatgaagaagaatta 240
           |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaaaaattctcttatacagagataaaaaccgaaaccaatgttgtatgaagaagaatta 440

                                                                       
Query: 241 tataccatgaccaagtagggcttatttcttttttttt-gttttttgtttttattgttgtt 299
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 tataccatgaccaagtagggcttatttcttttttttttgttttttgtttttattgttgtt 500

                                                                       
Query: 300 gtttttgttttttcgagacaggttttctctgtgtagccctggctgtcctggaactcactc 359
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttttgttttttcgagacagggtttctctgtgtagccctggctgtcctggaactcactc 560

                                                                       
Query: 360 tgtagaccaggctggcctcgatctcaagagatccgcctgcctctgcctcccaagtgctgg 419
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 tgtagaccaggctggcctcgatctca-gagatccgcctgcctctgcctcccaagtgctgg 619

                                                                       
Query: 420 gatcaaaggcgtgcaccaccacgcccgaccacgcccagcctggcttatttcatatatgtg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gatcaaaggcgtgcaccaccacgcccgaccacgcccagcctggcttatttcatatatgtg 679

                                                                       
Query: 480 aatagctcaacagaaaatgaactcatatgattcagcatatcagcagctaaatacaaaaaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aatagctcaacagaaaatgaactcatatgattcagcatatcagcagctaaatacaaaaaa 739

                                                                       
Query: 540 ggtattagatcacatcacttgaacatagaagaacatctgacagaacctaacacaaagtca 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ggtattagatcacatcacttgaacatagaagaacatctgacagaacctaacacaaagtca 799

                                                                       
Query: 600 taatgaaaagccacaggaaagaagaaatgtcctatttcaactcaaatcctgtaacaggct 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 taatgaaaagccacaggaaagaagaaatgtcctatttcaactcaaatcctgtaacaggct 859

                                                                  
Query: 660 tcacactcaacactgagcccaatgccttctatccaaaaccaggatgtaggcaaga 714
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 tcacactcaacactgagcccaatgccttctatccaaaaccaggatgtaggcaaga 914


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1114
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1104
Effective search space:   777216
Effective search space used:   777216
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no134_a05.g1 MSMg01no134_a05.g1 CHROMAT_FILE:
MSMg01no134_a05.g1 PHD_FILE: MSMg01no134_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:00 2005
         (768 letters)



>mm_chr7_105923928_105925092
          Length = 1165

 Score = 1377 bits (712), Expect = 0.0
 Identities = 753/772 (97%), Gaps = 11/772 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    gggcacatagtctgtctaaacctccttt----ccctatggagaagactgagagactccac 56
            ||||||||||||||||||||||||||||    |    |||||||||||||||||||||||
Sbjct: 1125 gggcacatagtctgtctaaacctcctttgtggc----tggagaagactgagagactccac 1070

                                                                        
Query: 57   atcaaggagagccttcctcaggccatttgcacatcagagagcaatcaagagtggagacaa 116
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 atcaaggagagccttcctcaggccatttgcacatcagagagcaatcaagagtggagacaa 1010

                                                                        
Query: 117  gcatggtaactttggagtcaccttcctgggttcaaatctcagctacgcaaactcggccat 176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 gcatggtaactttggagtcaccttcctgggttcaaatctcagctacgcaaactcggccat 950

                                                                        
Query: 177  ggacgcaagcccatgttacagacgtggacagaatgatcactgcagagagtgggtgagatt 236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949  ggacgcaagcccatgttacagacgtggacagaatgatcactgcagagagtgggtgagatt 890

                                                                        
Query: 237  ctccagtgtgaacatctctagcacgttagggtcaggctgggacaacgactagttgtcttc 296
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 889  ctccagtgtgaacatctctagcacgttagggtcaggctgggacatcgactagttgtcttc 830

                                                                        
Query: 297  ccatagagcttagtgcttagagaaggacacctgcctgacactgctcctgacagccatggc 356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 829  ccatagagcttagtgcttagagaaggacacctgcctgacactgctcctgacagccctggc 770

                                                                        
Query: 357  cagcccagcctcagtcttccattataagtgtttagtgttcgaaagctccaagtccctgtg 416
            |||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 769  cagcccggcctcagtcttccattataagtgttcagtgttcgaaggctccaagtccctgtg 710

                                                                        
Query: 417  gagtgctacactatgccctgtgcagacccttcaggctgtcagaggacaatgattaggtac 476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709  gagtgctacactatgccctgtgcagacccttcaggctgtcagaggacaatgattaggtac 650

                                                                        
Query: 477  ctagcttcctaaaacctctttgacaatcaaaacaagcggcattttccccccactttgatg 536
            ||||||||||||||||||||||||||||||||||||| ||||   |||||| ||||||||
Sbjct: 649  ctagcttcctaaaacctctttgacaatcaaaacaagcagcat---cccccccctttgatg 593

                                                                        
Query: 537  tgcattggtaaacactgaggtggggcttagaatcagacacactttcccaacccacttttg 596
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592  tgtattggtaaacactgaggtggggcttagaatcagacacactttcccaacccacttttg 533

                                                                        
Query: 597  ccactgaatgccgtctctatggttccattttaccatgtgtaaagtggggctcactatcct 656
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532  ccactgaatgccgtctctatggttccattttaccatgtgtaaagtggggctcactatcct 473

                                                                        
Query: 657  ccctcacagggagacatacacaggcaggcttcctcaccagagttggagctcagaagttgg 716
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472  ccctcacagggagacatacacaggcaggcttcctcaccagagttggagctcagaagttgg 413

                                                                
Query: 717  aattcctctgcttcttggtgactcagggacaactgtaatgctcgcccaggca 768
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412  aattcctctgcttcttggtgactcagggacaactgtaatgctcgcccaggca 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 768
Length of database: 1165
Length adjustment: 10
Effective length of query: 758
Effective length of database: 1155
Effective search space:   875490
Effective search space used:   875490
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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