Query= MSMg01no134_f14.b1 MSMg01no134_f14.b1 CHROMAT_FILE:
MSMg01no134_f14.b1 PHD_FILE: MSMg01no134_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:40 2005
(405 letters)
>mm_chr7_54231179_54231983
Length = 805
Score = 663 bits (343), Expect = 0.0
Identities = 384/405 (94%), Gaps = 16/405 (3%)
Strand = Plus / Plus
Query: 5 gaattcttagctgttagaactgtttgaccctaagagcttcagtgttatttgcctcttgga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattcttagctgttagaactgtttgaccctaagagcttcagtgttatttgcctcttgga 268
Query: 65 tttctggaaactggataggttccca--aaaacaaacaaacaaacaaacaaacaaacaaac 122
||||||| ||||||||||||| | |||| ||||||||||||||||||||||||||
Sbjct: 269 tttctgggaactggataggtt---attaaaa---acaaacaaacaaacaaacaaacaaac 322
Query: 123 aaacgccagccaaagaccgaaaagggaaaggggatgggctagaagagaagagaaggcaga 182
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gaacgccagccaaagaaagaaaagggaaaggggatgggctagaagagaagagaaggcaga 382
Query: 183 tggtgcagaagattgtgttagaaaacagttgcgccaggagatgctgtgctgagaagacag 242
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 383 tggtgcagaagattgtgttagaaaacagttgcgccagaagatgctgtgctgagaagacag 442
Query: 243 gctagatcagttgttacagtttggagctgctagtattgggaaaactgggagaagggactg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gctagatcagttgttacagtttggagctgctagtattgggaaaactgggagaagggactg 502
Query: 303 tttaagcacactcttgggaaactgagggtggaacagttgagagaaatgttta----tttt 358
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 503 tttaagcacactcttgggaaactgagggtggaacagttgagagaaatgtttaaacct--- 559
Query: 359 tgggaaaagggctggcagggagctaagagaactggctattaaaaa 403
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 -gggaaaagggctggcagggagctaagagaactggctattaaaaa 603
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space: 315216
Effective search space used: 315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no134_f14.g1 MSMg01no134_f14.g1 CHROMAT_FILE:
MSMg01no134_f14.g1 PHD_FILE: MSMg01no134_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:40 2005
(370 letters)
>mm_chr7_54416714_54417483
Length = 770
Score = 644 bits (333), Expect = 0.0
Identities = 360/373 (96%), Gaps = 8/373 (2%)
Strand = Plus / Minus
Query: 2 actgaaggaaatgccaggcctcccctcatccgtgaagatgtcagctgtgttatcccccca 61
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct: 570 actgaaggaaatgccaggcctcccctcatccgtgaagatggcagctgtgttatccaccta 511
Query: 62 cttgcctaaagaaaagggagcagcccaccaccaccgctgcctcacagcacgacagctgca 121
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 510 cttgcctaaagaaaagggagcagcccaccaccaccgctgcctcacagcaggacagctgca 451
Query: 122 caagctggtccccgatccaggtgtggaagcttttacagatgggagttaagcctgcaatag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 caagctggtccccgatccaggtgtggaagcttttacagatgggagttaagcctgcaatag 391
Query: 182 gaggaggagtccttcacagcaagagactcggcccaacaaaatatcaaggcagggaactgt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gaggaggagtccttcacagcaagagactcggcccaacaaaatatcaaggcagggaactgt 331
Query: 242 ttatctcaggggccaaagaaacaaaaaacagaggccaaaccctacagttcctaaaagctg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttatctcaggggccaaagaaacaaaaaacagaggccaaaccctacagttcctaaaagctg 271
Query: 302 tctgggcatcctgggagctgttcc----ttttttctcacaaagagccaaggtccagtcca 357
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 270 tctgggcatcctgggagctgttcccagg----ttcacacaaagagccaaggtccagtcca 215
Query: 358 tgaagacatagcc 370
|||||||||||||
Sbjct: 214 tgaagacatagcc 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space: 274721
Effective search space used: 274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
