Query= MSMg01no134_h22.b1 MSMg01no134_h22.b1 CHROMAT_FILE:
MSMg01no134_h22.b1 PHD_FILE: MSMg01no134_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:57 2005
(786 letters)
>mm_chr7_74749685_74750870
Length = 1186
Score = 1431 bits (740), Expect = 0.0
Identities = 764/772 (98%), Gaps = 1/772 (0%)
Strand = Plus / Plus
Query: 16 ggaattcca-gtatgggaaacttaaatagctctatggataatgctcagaaacaatctaac 74
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ggaattccaagtatgggaaacttaaatagctctatggataatgctcagaaacaatctaac 274
Query: 75 tgtccttccagtgtaagccaacataatgcacagaatcccatcactcacagtgaagatcag 134
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tgtccatgcagtgtaagccaacataatgcacagaatcccatcactcacagtgaagatcag 334
Query: 135 aaacctacctctgagcttgacctcctcctctcaagccacagaaaaatgtcactaaaagag 194
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aaacctacctctgagcaagccctcctcctctcaagccacagaaaaatgtcactaaaagag 394
Query: 195 gtctgtgtcacccactgttgtgaaataacactggagaaattcaacctgaaggagacagac 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gtctgtgtcacccactgttgtgaaataacactggagaaattcaacctgaaggagacagac 454
Query: 255 ttattcaagccatggtactagaggcttcactccatccatggccagccaagcatcataaca 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ttattcaagccatggtactagaggcttcactccatccatggccagccaagcatcataaca 514
Query: 315 gggggcatgcggtacaaccaagctgctcgccttctggcagctgccaacgagagaaggtat 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gggggcatgcggtacaaccaagctgctcgccttctggcagctgccaacgagagaaggtat 574
Query: 375 cagaccggggcaagatacacccttcaaagacatgtctccagtatctaacttcctccacgt 434
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 575 caggccggggcaagatacacccttcaaagacatgtctccagtaactaacttcctccacgt 634
Query: 435 aggccagcctcctcaggcttctaccgcctcccaagaacacccccagctggagaccagcct 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aggccagcctcctcaggcttctaccgcctcccaagaacacccccagctggagaccagcct 694
Query: 495 caacccatgagactgtggggacattccagacccaaactatagcaagatgctaggttttaa 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 caacccatgagactgtggggacattccagacccaaactatagcaagatgctaggttttaa 754
Query: 555 ttcactccaaattgtattaaaagcagggatggcagcagacgcggacaaggagcagaggaa 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ttcactccaaattgtattaaaagcagggatggcagcagacgcggacaaggagcagaggaa 814
Query: 615 atgcataactaactcatggcatctgtcatctgcatgtaagggcactcatctctgcagcct 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 atgcataactaactcatggcatctgtcatctgcatgtaagggcactcatctctgcagcct 874
Query: 675 ctcctcactgatgaagccaagagtctcgacaccaaggtagagtctatgctggttggtttg 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 ctcctcactgatgaagccaagagtctcgacaccaaggtagagtctatgctggttggtttg 934
Query: 735 tttgtttttaatctacaaacaaatggacagagaaaacggagtctactttcaa 786
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 tttgtttttaatctacaaacaaatggacagagaaaacggagtctactttcaa 986
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 786
Length of database: 1186
Length adjustment: 10
Effective length of query: 776
Effective length of database: 1176
Effective search space: 912576
Effective search space used: 912576
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no134_h22.g1 MSMg01no134_h22.g1 CHROMAT_FILE:
MSMg01no134_h22.g1 PHD_FILE: MSMg01no134_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:57 2005
(629 letters)
>mm_chr7_74799780_74800808
Length = 1029
Score = 1033 bits (534), Expect = 0.0
Identities = 552/558 (98%)
Strand = Plus / Minus
Query: 72 gatttctgtatttgtacctcttcccaagagaaagggatggagcagacagagggatgggat 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 gatttctgtatttgtacctcttcccaagagaaagggatggagcagacagagggatgggat 970
Query: 132 tttcctgacccaggccactcatttcccaagtttcatctagggcatggttggctatggggc 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 tttcctgacccaggccactcatttcccaagtttcatctagggcatggttggctatggggc 910
Query: 192 ccagttacttcacacactacacccgtttgcgacttgccatcaactgtagcatgtattcta 251
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 909 ccagttacttcacacactacaccagtttgcgacttgccatcaactgtagcatgtattcta 850
Query: 252 atctcagagatgtttaattgccgcaggaaatgtgtgttcctgaaaggtgccatgctacct 311
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 849 atctcagagatgtttaactgccgcaggaaatgtgtgttcctgaaagttgccatgctacct 790
Query: 312 gtctgacttctgaaaggatttgaatctgtgaccttgctttaaatgcacactttcagtgtt 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gtctgacttctgaaaggatttgaatctgtgaccttgctttaaatgcacactttcagtgtt 730
Query: 372 tgcgccatataggaacacctttactgtaaagtcctcttccttagttcactcacttggagc 431
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 729 tgcgccatataggaacaccttttctgtaaagtcctcttccttagttcactcacttggagc 670
Query: 432 tccatgcttatcatcagctgcttttcttttctttgtaacagccatagctggggcttaggg 491
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 669 tccatgcttatcatcagctgcttttcttttctttgtaacagccatagctggggtttagga 610
Query: 492 tttcattagaaatcagcccaggccccaacaccacctcctcctccacagcttcaaaggcct 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tttcattagaaatcagcccaggccccaacaccacctcctcctccacagcttcaaaggcct 550
Query: 552 ctctcagtctgcactcacaactgccagtcagacttacctaatcaatagatgctatgcctt 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ctctcagtctgcactcacaactgccagtcagacttacctaatcaatagatgctatgcctt 490
Query: 612 cttccagacctgcctagt 629
||||||||||||||||||
Sbjct: 489 cttccagacctgcctagt 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
