BAC Information

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BAC

Clone NameMSMg01-134O08
Chromosome7 (Build37)
Map Location 94,389,713 - 94,390,265
singlet/doubletsinglet
Overlap genenone
Upstream geneVmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896, EG621430
Downstream geneLOC621477, Nox4, Tyr, Grm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134O08.T7 (MSMg01no134_o08.b1)MSMg01-134O08.TJ (MSMg01no134_o08.g1)
ACCAG341497AG341498
length1,3431,226
length of high quality
(start - end)
211 (88 - 298)560 (84 - 643)
definitionCHROMAT_FILE: MSMg01no134_o08.b1 PHD_FILE: MSMg01no134_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:46 2005CHROMAT_FILE: MSMg01no134_o08.g1 PHD_FILE: MSMg01no134_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCACTCATNNNNNNGCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACATAGGCATAAAAACCCGTTATGATTGGTAAGGAATCAG
TATTGCACATCAAGCCTGCATAAGCCCAAGTTTCTTTTCATGAGGTTTTT
TTTAATTTTTATTTTTGTAGTATGTGTTTTGTGAAAACTCTTTGTAATCT
ANACAGCATTGCTATGATGTCATAGTTTATGTCTCCACAGTTCAGTCTAC
ATGAGCATTGCACATTGCCCATAGGAGGGATAGGAAAGTGTTCCAAGGAT
AAAAAAAAATATGTGTAACTAATTATACAGTTGTTTTTTTGATGCTAAAT
GTTTCATTACGTTTGTCTGCCATTTCTGAATCATTTTGATATCCTATAAT
TATTTTTTTTTTTTGCCAAAAGGTGCATTTCATTATTTTTTATCACTTAT
TTCCCCCCCTATCTATTCTCCCCCCTTGCTTTTCTATTTCTTTATTTTTA
ATATTAATTTTATTTTTTTCTCCTTTTTTCATCTTTCATTTTTATTCTTC
TTTATTATTTTTTTTATCATTTCTCTTTTTATATTCTTTGTACTTCTTAT
TCTATGTCTTTTTATACTTTTTTCTCATTTCTTTTCCTTACTCCTTTCTA
TATACTTCTTTTTTTTCTTTATATTTCTTCCTACTTTATTATACTTTTTT
CTTTTTTTTTTATTTTTTTCCCTCTTTTTTATTTTTTTTTAATATTTATT
TTCCTCTTTTTCTTTACCTTTTTTTATATTCATTTTTTTTTTTTCTTTAT
TTTTTTCTTTTCTTTCTTTTTTTATTTCTTCTTTTTTTTATTTTTTCTTT
TTACATTAACTCTTCTTTTTTTATTTCTATTTCTTACTTTTTTTTTTTAC
TTCCATCTATTCATAATTTATTTCTTTTTTTTTTCCACTTTCATTGTTTA
TTTTCTACATTTCATTTTATACTTACTTTTTCTTTATTTTGTCTCATTTT
TCTCTTTCTTCCACTCGTTCTCTCTCTTTCATTCTTTACACCAATCTAAC
TCCTTTTATTCTCTTTATACCTTTTTTATTCACTCATTCTTCTTTTCTTC
ATTTTTATGATTTTACTCTTCTCTACTTTCTATCTCAATTCTCCTTATCT
CCTACTCTTTCTTTTCTTATATTTCTATTATTCCTATCTCCCTTGCTTGT
TATCTTTACTTTTCTTTATTATACTCTTTTTTTTCTTTATATTTTCCTAT
CAATCCTTTACTTCTCGTCACTTTTCATTGATTTCAACACATCATTATAT
TTCTTCTTTTTTTTTAATTTTCTATATAATTCTTACTCTTCTC
CCCCTTTTTTTNNNAACAGGGGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAACTTGCCTTCATGTTGTA
GGACTTGTTTTTCAGCCTAGCATCTGGTCCTCTAGGCCATGAGAACTTCT
CCAACATCTCTGATTCCATCAGGAGCTGCCCAAGCCATGTGAGTGCACAG
AAGACATTCCTGAGAGACTTAGTCATATGGTGGTCTGCACTTGTTTTTGT
ATAGAAATGACAGTGAGTCACTGTCTGGAATGTGTCCCCACTCTTCAAAT
GGGAAGCCTCTAGGGCACTTTTCACTGGGTTTCTGATGGGCTTTCTTTCT
TGCCAAGGGCTCTGGGGTTAAGGTAAAGTTTCCTACACTTTTATCCTGTA
AGTAGTTCAAAGGTTGGGGATTTTCTGTCAGGTAAACCATACCTAGGATG
GTCTTTTCCATGCTCCCTCTTTTTTTTTTTTTGTTTCTTGAAAAAAACAT
CTTTCTTTTGAGTCTAAATACTGTTGTGTCTTGGCAATAAGACCTTTGTT
AGCAAAAAAATCAGTAAAGTGCGTGTTCTTGCCTGCTGTCAATCATATTT
CTAATATTTAATTTGTTGGGTCTTAAAAGAAAGGCTATTTAGAAGCACTA
AACTTTTATCCCTTAAAGTGGATTTCTTCTTATCTGAAAATCTAAGGCTT
GACTTTTTTATTCCTATATGATTAAAACTATAGATTTGATTAATAATTAT
TTACCTTCCTTTATTTTTATTGCTTTGTTGAATTATTATCGTTCTTTCTT
TTTAATAAGTTGATTTCCTTCCTTAGAAAATTTATTTTTTTCTCTAAATA
TGTTTTTTGTTATTATCTTACTTTTTATATATTTTTCTTTTTTTTGTTTT
CTATCTTTTCTTTATTTTTTTCTTCTATTTTTTTCTTTTTCTTCTCTTTC
ATATCTTTTATTTCTATTTTAACTTTTTTTATCTTTTTTTCTTTTTCTTT
CCTTTATATATCTTTTTTTTTATCTATCTTTCTTTTCTCCTTTTCTCTTC
TTTTTATCTTACATTTCTTTTTCTCTATTTCCTCATTCTCTTCTATTTTC
TTTATTTGTTAATATTCATCTTTTTTTTCTTTGATTTTTTCTATATTTTC
TCTTTCATTCCTCTTTTCTATTTTTTCCTCCTTTTTCTTCTTATTTTTCC
TTTCTATTCCTCTTTCTCTTTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_o08.g1 MSMg01no134_o08.g1 CHROMAT_FILE:
MSMg01no134_o08.g1 PHD_FILE: MSMg01no134_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:46 2005
         (560 letters)



>mm_chr7_94389513_94390472
          Length = 960

 Score =  963 bits (498), Expect = 0.0
 Identities = 542/560 (96%), Gaps = 7/560 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgccttcatgttgtaggacttgtttttcagcctagcatctggtcctctaggccatgag 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 201 cttgccttcatgttgtaggacttgtttttcagcatagcatctggtcctctagggcatgag 260

                                                                       
Query: 61  aacttctccaacatctctgattccatcaggagctgcccaagccatgtgagtgcacagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacttctccaacatctctgattccatcaggagctgcccaagccatgtgagtgcacagaag 320

                                                                       
Query: 121 acattcctgagagacttagtcatatggtggtctgcacttgtttttgtatagaaatgacag 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acattcctgagagatttagtcatatggtggtctgcacttgtttttgtatagaaatgacag 380

                                                                       
Query: 181 tgagtcactgtctggaatgtgtccccactcttcaaatgggaagcctctagggcacttttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagtcactgtctggaatgtgtccccactcttcaaatgggaagcctctagggcacttttc 440

                                                                       
Query: 241 actgggtttctgatgggctttctttcttgccaagggctctggggttaaggtaaagtttcc 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actggttttctgatgggctttctttcttgccaagggctctggggttaaggtaaagtttcc 500

                                                                       
Query: 301 tacacttttatcctgtaagtagttcaaaggttggggattttctgtcaggtaaaccatacc 360
           ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 501 tacacctttatcctgtaagtagttcaaaggttggggattttctgtcagttaaactatacc 560

                                                                       
Query: 361 taggatggtcttttccatgctccctctttttttttttttgtttcttgaaaaaaacatctt 420
           ||||||||||||||||||| |||||||||||||      ||||||||||||||| |||| 
Sbjct: 561 taggatggtcttttccatgttccctcttttttt------gtttcttgaaaaaaa-atcta 613

                                                                       
Query: 421 tcttttgagtctaaatactgttgtgtcttggcaataagacctttgttagcaaaaaaatca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 614 tcttttgagtctaaatactgttgtgtcttggcaataagacctttgttagcaaaaaaaaca 673

                                                                       
Query: 481 gtaaagtgcgtgttcttgcctgctgtcaatcatatttctaatatttaatttgttgggtct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 674 gtaaagtgcgtgttcttgcctgctgtcaatcatatttctaatatttaatttattgggtct 733

                               
Query: 541 taaaagaaaggctatttaga 560
           ||||||||||||||||||||
Sbjct: 734 taaaagaaaggctatttaga 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)